Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq181 187 6e-42 seq1421 156 1e-32 seq207 140 7e-28 >seq181 Length=610132 Score = 187 bits (206), Expect = 6e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| | || | |||| |||||| ||||||||||||||||| || || ||| Sbjct 522761 TCCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACT 522702 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||||||||| ||||||| ||| || ||||| || || | || |||||||| ||||| Sbjct 522701 GAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGG 522642 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||| ||||| || || || || || || | ||||| || ||||| || Sbjct 522641 AATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAAC 522582 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| || |||||||| ||||| ||||| || ||||| Sbjct 522581 ATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| ||||||||||||||||| || || ||| Sbjct 522535 ATACCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCA 522476 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||||||||| ||||||| ||| || ||||| || || | || |||||||| ||| Sbjct 522475 CTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGA 522416 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || || || || || || | ||||| || ||||| Sbjct 522415 GGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCA 522356 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| || |||||||| ||||| ||||| || ||||| Sbjct 522355 ACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 >seq1421 Length=125447 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| ||| | ||| |||||||| || || || || ||||| Sbjct 52324 TCCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 52265 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||||| |||||| ||||||||||| | || |||||||| || || Sbjct 52264 TAATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 52205 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||| || ||||| || ||||| || || | ||||| |||||||| Sbjct 52204 AATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTAC 52145 Query 104512 CTCTAGTGTAATAGTCTTACC 104532 || |||||||| || ||||| Sbjct 52144 ATCAAGTGTAATTGTTTTACC 52124 >seq207 Length=264058 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | ||||| || | ||| |||||||| || ||||| || |||||| Sbjct 251346 CCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGAT 251405 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||||| |||||| || || ||||| | || |||||||| || || Sbjct 251406 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGA 251465 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| || ||||| || ||||| || || | ||||| || || || Sbjct 251466 ATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGACA 251525 Query 104513 TCTAGTGTAATAGTCTTACC 104532 |||| || || |||||||| Sbjct 251526 TCTAAGGTGATGGTCTTACC 251545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377038681184