Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1256 244 1e-59 seq1255 244 1e-59 seq518 244 1e-59 seq1382 242 4e-59 seq601 228 1e-54 seq182 114 2e-20 >seq1256 Length=7839 Score = 244 bits (270), Expect = 1e-59 Identities = 484/698 (69%), Gaps = 29/698 (4%) Strand=Plus/Minus Query 164409 AATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTC 164468 |||||| | ||||| ||||| |||||| | ||| || | || ||||||||| Sbjct 1515 AATGGGTATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAG 1456 Query 164469 TAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA-CATATAAAAGGAATT 164526 |||| |||| | | || || | | ||| | || |||||| ||| ||| ||| || Sbjct 1455 TAGAGTT-TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATG 1398 Query 164527 TTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT-GCTCAAGC 164585 |||||| | || |||||||||| |||||||||||||| ||||| | ||| ||| |||| Sbjct 1397 TTATTATACGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCG-TCAATTAGCTAAAGC 1339 Query 164586 TTTTAAA--TCGCGACCCGTTAAAATT-GTTAATGGTCCTGAATTATTGAACAAATATGT 164642 || || ||| || || ||| || || | |||||| ||| | || | |||||||| Sbjct 1338 ATTGAATGCTCGTGAACC---AAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGT 1282 Query 164643 AGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAA-AGA 164701 |||| | || ||||||||| ||||| || ||| | || ||||| | |||||| ||| Sbjct 1281 AGGTCAATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGA 1222 Query 164702 AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCA 164761 || | || |||| |||||||| ||||| | |||||||| |||||||| | || | Sbjct 1221 AATGGGTGATAA-TAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTA 1163 Query 164762 AA--AA--------AC--GTGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGC 164809 || || || ||| || || | | | |||||| || | || ||||| || Sbjct 1162 AAGCAAGAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTAT 1103 Query 164810 TTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACC 164869 | | || || ||||||||||| || || |||||| | || ||| | |||||||| || | Sbjct 1102 TAGCAAAGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATC 1043 Query 164870 GACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAA 164929 | ||||| |||||| |||||||||| |||||||| |||| ||| | | || |||| Sbjct 1042 GTAAAGATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAA 983 Query 164930 TAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 | || || || || ||| || | | || || || || ||||| |||||||||| Sbjct 982 TTGGTTTGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGA 923 Query 164990 AATCCTGTGATATATTATCTCCCGATGTA-GATTTAAATAAAATAGCTGCCGAAACTAAA 165048 | | ||||||||||| ||||| | || | | ||||||| ||| || Sbjct 922 GAGAGAATAATATATTATCTAGTAATGTATCAATTCCA-GATTTAGCTGCAAGAACAAAG 864 Query 165049 AATTATAGTGGTGCTGAATTAGAGGGATTAGT-AAGAG 165085 |||| || |||||| ||| | || || ||||| ||||| Sbjct 863 AATTTTACTGGTGCAGAAATCGAAGGTTTAGTGAAGAG 826 >seq1255 Length=29917 Score = 244 bits (270), Expect = 1e-59 Identities = 484/698 (69%), Gaps = 29/698 (4%) Strand=Plus/Minus Query 164409 AATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTC 164468 |||||| | ||||| ||||| |||||| | ||| || | || ||||||||| Sbjct 23081 AATGGGTATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAG 23022 Query 164469 TAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA-CATATAAAAGGAATT 164526 |||| |||| | | || || | | ||| | || |||||| ||| ||| ||| || Sbjct 23021 TAGAGTT-TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATG 22964 Query 164527 TTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT-GCTCAAGC 164585 |||||| | || |||||||||| |||||||||||||| ||||| | ||| ||| |||| Sbjct 22963 TTATTATACGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCG-TCAATTAGCTAAAGC 22905 Query 164586 TTTTAAA--TCGCGACCCGTTAAAATT-GTTAATGGTCCTGAATTATTGAACAAATATGT 164642 || || ||| || || ||| || || | |||||| ||| | || | |||||||| Sbjct 22904 ATTGAATGCTCGTGAACC---AAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGT 22848 Query 164643 AGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAA-AGA 164701 |||| | || ||||||||| ||||| || ||| | || ||||| | |||||| ||| Sbjct 22847 AGGTCAATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGA 22788 Query 164702 AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCA 164761 || | || |||| |||||||| ||||| | |||||||| |||||||| | || | Sbjct 22787 AATGGGTGATAA-TAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTA 22729 Query 164762 AA--AA--------AC--GTGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGC 164809 || || || ||| || || | | | |||||| || | || ||||| || Sbjct 22728 AAGCAAGAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTAT 22669 Query 164810 TTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACC 164869 | | || || ||||||||||| || || |||||| | || ||| | |||||||| || | Sbjct 22668 TAGCAAAGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATC 22609 Query 164870 GACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAA 164929 | ||||| |||||| |||||||||| |||||||| |||| ||| | | || |||| Sbjct 22608 GTAAAGATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAA 22549 Query 164930 TAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 | || || || || ||| || | | || || || || ||||| |||||||||| Sbjct 22548 TTGGTTTGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGA 22489 Query 164990 AATCCTGTGATATATTATCTCCCGATGTA-GATTTAAATAAAATAGCTGCCGAAACTAAA 165048 | | ||||||||||| ||||| | || | | ||||||| ||| || Sbjct 22488 GAGAGAATAATATATTATCTAGTAATGTATCAATTCCA-GATTTAGCTGCAAGAACAAAG 22430 Query 165049 AATTATAGTGGTGCTGAATTAGAGGGATTAGT-AAGAG 165085 |||| || |||||| ||| | || || ||||| ||||| Sbjct 22429 AATTTTACTGGTGCAGAAATCGAAGGTTTAGTGAAGAG 22392 >seq518 Length=27667 Score = 244 bits (270), Expect = 1e-59 Identities = 484/698 (69%), Gaps = 29/698 (4%) Strand=Plus/Plus Query 164409 AATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTC 164468 |||||| | ||||| ||||| |||||| | ||| || | || ||||||||| Sbjct 5422 AATGGGTATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAG 5481 Query 164469 TAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA-CATATAAAAGGAATT 164526 |||| |||| | | || || | | ||| | || |||||| ||| ||| ||| || Sbjct 5482 TAGAGTT-TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATG 5539 Query 164527 TTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT-GCTCAAGC 164585 |||||| | || |||||||||| |||||||||||||| ||||| | ||| ||| |||| Sbjct 5540 TTATTATACGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCG-TCAATTAGCTAAAGC 5598 Query 164586 TTTTAAA--TCGCGACCCGTTAAAATT-GTTAATGGTCCTGAATTATTGAACAAATATGT 164642 || || ||| || || ||| || || | |||||| ||| | || | |||||||| Sbjct 5599 ATTGAATGCTCGTGAACC---AAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGT 5655 Query 164643 AGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAA-AGA 164701 |||| | || ||||||||| ||||| || ||| | || ||||| | |||||| ||| Sbjct 5656 AGGTCAATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGA 5715 Query 164702 AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCA 164761 || | || |||| |||||||| ||||| | |||||||| |||||||| | || | Sbjct 5716 AATGGGTGATAA-TAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTA 5774 Query 164762 AA--AA--------AC--GTGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGC 164809 || || || ||| || || | | | |||||| || | || ||||| || Sbjct 5775 AAGCAAGAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTAT 5834 Query 164810 TTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACC 164869 | | || || ||||||||||| || || |||||| | || ||| | |||||||| || | Sbjct 5835 TAGCAAAGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATC 5894 Query 164870 GACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAA 164929 | ||||| |||||| |||||||||| |||||||| |||| ||| | | || |||| Sbjct 5895 GTAAAGATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAA 5954 Query 164930 TAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 | || || || || ||| || | | || || || || ||||| |||||||||| Sbjct 5955 TTGGTTTGCCTGATGAAGCTGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGA 6014 Query 164990 AATCCTGTGATATATTATCTCCCGATGTA-GATTTAAATAAAATAGCTGCCGAAACTAAA 165048 | | ||||||||||| ||||| | || | | ||||||| ||| || Sbjct 6015 GAGAGAATAATATATTATCTAGTAATGTATCAATTCCA-GATTTAGCTGCAAGAACAAAG 6073 Query 165049 AATTATAGTGGTGCTGAATTAGAGGGATTAGT-AAGAG 165085 |||| || |||||| ||| | || || ||||| ||||| Sbjct 6074 AATTTTACTGGTGCAGAAATCGAAGGTTTAGTGAAGAG 6111 >seq1382 Length=24816 Score = 242 bits (268), Expect = 4e-59 Identities = 424/609 (70%), Gaps = 16/609 (3%) Strand=Plus/Minus Query 6806 TTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCC--TAGCGT 6863 ||||||||||||| | | || || || | ||||| ||||| ||| || || | Sbjct 15346 TTAATTGTTCTTTCAATGGTTCAATGTGGTTATTATAAACATGAGTATCACCAGTAAC-- 15289 Query 6864 ATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGC 6923 ||| | ||| ||||||||||| | || | | ||||| |||||| || ||||||| Sbjct 15288 ATGTACAAACTCACCTGGTTTTAACCCAGTAACATGAGCGATTAAAATAGTCAATAATGA 15229 Query 6924 ATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG 6983 ||||| |||| |||||| || || |||||||||||||| |||||||||||| ||| Sbjct 15228 GTAAGATGCTATATTAAATGGAACGCCTAATCCCATATCGCATGATCTTTGATACATTTG 15169 Query 6984 ACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 ||| ||||| | ||| || ||||||| ||||||| | |||||| |||||||| Sbjct 15168 ACATGATAACTCACCATTACTTA---CATAAAACTGACACATCATATGACAAGGAGGTAA 15112 Query 7041 AACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGG 7100 | | | ||| || ||||||||||| |||| || ||| | | ||| |||| Sbjct 15111 TGCCATTTTAGGAATAGCACTAGGATTCCAAGCTGTCAATATAATTCTACGATCCGTTGG 15052 Query 7101 ATTTGTTTTTAATT-TTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAAT 7159 | |||||||||||| || ||| | | | ||||| || | || | | ||||| Sbjct 15051 A-TTGTTTTTAATTGTTTCTATTACTTCCTTCAATTGGTCAACTCCTTTATTAGTATAAT 14993 Query 7160 TAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGAC 7219 ||||| | | | |||| | ||| |||||||| | ||||||||| ||||||| |||| Sbjct 14992 CAGTATTGAAGTCTTTATATTCAGCACCAAAATGACGCCATTGAAATCCATAAACTGGAC 14933 Query 7220 CTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTA--AATTAGATTTTGATCC 7277 |||||||||| |||| | || || || |||||| || | |||| | |||| || Sbjct 14932 CTAAATCACCCACTTCTCTATCCTTTAAACCTAATTTATCAAGGAATT--CTCTTGAACC 14875 Query 7278 ATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTT 7337 || ||||||||||||| | |||| || | || | ||||||| || || Sbjct 14874 ATTGCCATCCCAAATATGAATGTTCTTTTCTGCGAGATGATTGGCATTTGTATCACCATT 14815 Query 7338 AAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAA 7397 || |||||||| | ||| || | | ||| | |||||| | ||||||||| || ||||| Sbjct 14814 AATAAACCATAATAATTCCTCAGCAACTCCTCTCCAAAATACTCTTTTTGTTGTTAATAA 14755 Query 7398 AGGGAATGT 7406 || ||||| Sbjct 14754 TGGCAATGT 14746 >seq601 Length=19949 Score = 228 bits (252), Expect = 1e-54 Identities = 482/698 (69%), Gaps = 31/698 (4%) Strand=Plus/Plus Query 164409 AATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTC 164468 |||||| | ||||| ||||| |||||| | ||| || | || ||||||||| Sbjct 16594 AATGGGTATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAG 16653 Query 164469 TAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA-CATATAAAAGGAATT 164526 |||| |||| | | || || | | ||| | || |||||| ||| ||| ||| || Sbjct 16654 TAGAGTT-TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATG 16711 Query 164527 TTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT-GCTCAAGC 164585 |||||| | || |||||||||| |||||||||||||| ||||| | ||| ||| |||| Sbjct 16712 TTATTATACGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCG-TCAATTAGCTAAAGC 16770 Query 164586 TTTTAAA--TCGCGACCCGTTAAAATT-GTTAATGGTCCTGAATTATTGAACAAATATGT 164642 || || ||| || || ||| || || | |||||| ||| | || | |||||||| Sbjct 16771 ATTGAATGCTCGTGAACC---AAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGT 16827 Query 164643 AGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAA-AGA 164701 |||| | || ||||||||| ||||| || ||| | || ||||| | |||||| ||| Sbjct 16828 AGGTCAATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGA 16887 Query 164702 AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCA 164761 || | || |||| |||||||| ||||| | |||||||| |||||||| | || | Sbjct 16888 AATGGGTGATAA-TAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTA 16946 Query 164762 AA--AA--------AC--GTGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGC 164809 || || || ||| || || | | | |||||| || | || ||||| || Sbjct 16947 AAGCAAGAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTAT 17006 Query 164810 TTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACC 164869 | | || || ||||||||||| || || |||||| | || ||| | |||||||| || | Sbjct 17007 TAGCAAAGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATC 17066 Query 164870 GACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAA 164929 | ||||| |||||| |||||||||| |||||||| |||| ||| | | || |||| Sbjct 17067 GTAAAGATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAA 17126 Query 164930 TAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 | | || || || ||| || | | || || || || ||||| |||||||||| Sbjct 17127 T-TGTTTGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGA 17185 Query 164990 AATCCTGTGATATATTATCTCCCGATGTA-GATTTAAATAAAATAGCTGCCGAAACTAAA 165048 | | | ||||||||| ||||| | || | | ||||||| ||| || Sbjct 17186 GAGAGAAT-AAATATTATCTAGTAATGTATCAATTCCA-GATTTAGCTGCAAGAACAAAG 17243 Query 165049 AATTATAGTGGTGCTGAATTAGAGGGATTAGT-AAGAG 165085 |||| || |||||| ||| | || || ||||| ||||| Sbjct 17244 AATTTTACTGGTGCAGAAATCGAAGGTTTAGTGAAGAG 17281 >seq182 Length=52265 Score = 114 bits (126), Expect = 2e-20 Identities = 166/231 (72%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 6806 TTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCC--TAGCGT 6863 ||||||||||||| | | || || || | ||||| ||||| ||| || || | Sbjct 227 TTAATTGTTCTTTCAATGGTTCAATGTGGTTATTATAAACATGAGTATCACCAGTAAC-- 170 Query 6864 ATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGC 6923 ||| | ||| ||||||||||| | || | | ||||| |||||| || ||||||| Sbjct 169 ATGTACAAACTCACCTGGTTTTAACCCAGTAACATGAGCGATTAAAATAGTCAATAATGA 110 Query 6924 ATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG 6983 ||||| |||| |||||| || || |||||||||||||| |||||||||||| ||| Sbjct 109 GTAAGATGCTATATTAAATGGAACGCCTAATCCCATATCGCATGATCTTTGATACATTTG 50 Query 6984 ACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACA 7031 ||| ||||| | ||| || ||||||| ||||||| | |||||| Sbjct 49 ACATGATAACTCACCATTACTTA---CATAAAACTGACACATCATATGACA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595861214716800