Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq181 170 2e-37 seq207 91.5 1e-13 seq1421 89.7 5e-13 >seq181 Length=610132 Score = 170 bits (188), Expect = 2e-37 Identities = 193/255 (76%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG 94814 ||| |||||| ||| ||| || || |||||||||| ||||| || || ||||||| Sbjct 522558 TAAGGGTTTTAACAAAGATTTGCATACCACCTCTCAATCTTAACACTAAATGTAAAGTAG 522499 Query 94815 ATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 |||| || || | ||| ||||| || | ||| | ||| || | || || || | | Sbjct 522498 ATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGA 522439 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| |||||||| ||||||||||||||||||||||| || | |||||| ||||||||| Sbjct 522438 AGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGT 522379 Query 94935 CGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | | ||| ||| | ||| || || |||| || || ||||| |||||||| ||||| Sbjct 522378 TGTCAATAGTATCA-CTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTA 522320 Query 94994 ACAAAGATCTGCATG 95008 |||||||| |||||| Sbjct 522319 ACAAAGATTTGCATG 522305 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||||| ||||| || || ||||||||||| || || | ||| ||||| || Sbjct 522761 TCCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACT 522702 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | ||| || | || || || | ||||| |||||||| ||||||||||| Sbjct 522701 GAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGG 522642 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGA 94958 |||||||||||| || | |||||| ||||||||| | | | ||| ||| | ||| || | Sbjct 522641 AATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCA-CTTGGTTCAA 522583 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || ||||| |||||||| ||||| |||||||| ||||| Sbjct 522582 CATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq207 Length=264058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 || || ||||| |||| ||| || ||||| | || ||||| ||||| | || ||||| Sbjct 251343 ACACCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCA 251402 Query 94838 CTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 ||| |||| | ||| || | ||||| ||| | || || |||||||| ||||||| Sbjct 251403 G--ATAATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTG 251460 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 | |||||||||||||| || | || || ||||| ||| Sbjct 251461 GTGGAATACCTTCTTTATCTTGGATCTTAGCCTTTACG 251498 >seq1421 Length=125447 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-G 94837 |||| ||||| |||| || || || || | || ||||| ||||| | ||| ||||| | Sbjct 52325 CTCCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAG 52266 Query 94838 CTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||| || | ||||| || |||| || |||||||| |||||||| Sbjct 52265 ATAAT-GTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 52207 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 |||||||||||||| || | || || ||||| ||| Sbjct 52206 GGAATACCTTCTTTATCTTGGATCTTAGCCTTTACG 52171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283085929280