Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1422 129 9e-26 seq1298 122 1e-23 seq200 120 5e-23 seq1230 113 7e-21 >seq1422 Length=186864 Score = 129 bits (142), Expect = 9e-26 Identities = 200/282 (71%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| | ||||| | | |||||| ||||||||| ||| ||||| |||||||| ||| Sbjct 170098 GCTAAGAGACATCGAAAAGTTCTTCGTGATAACATCAGAGGTATCACAAAGCCAGCCATC 170039 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | ||||| || || ||| || ||| || | |||||||| | Sbjct 170038 CGTCGTCTTGCAAGAAGAGGTGGTGTAAAACGTATCAGTGGTTTAATTTATGAAGAAACC 169979 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 | | ||| || ||| | ||| | | | ||| | |||||| || || || || || Sbjct 169978 AGAGGTGTATTAAAGGTTTTCTTAGAATCTGTTGTAAGAGATGCTGTTACA-TACACAGA 169920 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || | | | ||||||||||| | |||||| | || ||||| || ||| | ||||| Sbjct 169919 ACATGCCAGAAGAAAGACTGTCACTGCTATGGATGTAGTATATGCCTTAAAAAGACAAGG 169860 Query 16672 CCGTAAGATTTATGGTTTTGGAA-GTTAATCTTCTAATCAAA 16712 | | ||||||||||||||| || ||| |||| | ||| Sbjct 169859 AAGAACCCTTTATGGTTTTGGAATGTAAATTGTCTATTAAAA 169818 >seq1298 Length=527778 Score = 122 bits (134), Expect = 1e-23 Identities = 187/263 (71%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||| ||| ||||| |||||||| ||||||||||| ||| | | || Sbjct 247714 TCTTCGTGATAACATCAGAGGTATCACAAAGCCAGCCATCCGTCGTCTTGCTAGAAGAGG 247655 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| | ||| || | |||||||| | | | ||| || ||| | || Sbjct 247654 TGGTGTAAAACGTATTAGTGGTTTAATTTATGAAGAAACCAGAGGTGTATTAAAGGTTTT 247595 Query 16573 CCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | | ||| | |||||| || || || || || || || | | | ||||||| Sbjct 247594 CTTAGAATCTGTTGTAAGAGATGCTGTTACA-TACACAGAACATGCCAGAAGAAAGACTG 247536 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 |||| | |||||| | || ||||| || ||| | ||||| | | |||||||||||| Sbjct 247535 TCACTGCTATGGATGTAGTATATGCCTTAAAAAGACAAGGAAGAACCCTTTATGGTTTTG 247476 Query 16692 GAA-GTTAATCTTCTAATCAAAC 16713 ||| || ||| | ||| | |||| Sbjct 247475 GAATGTAAATTTCCTATTGAAAC 247453 >seq200 Length=139949 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||| ||| || || |||||||| ||||||||||| ||| | | || Sbjct 21477 TCTTCGTGATAACATCAGAGGTATTACAAAGCCAGCCATCCGTCGTCTTGCTAGAAGAGG 21536 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| || ||| || | |||||||| | | | | ||| || ||| | || Sbjct 21537 TGGTGTAAAACGTATCAGTGGTTTAATTTATGAAGAAACTAGAGGTGTATTAAAGGTTTT 21596 Query 16573 CCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | | ||| | |||||| || || || || || || || | | | ||||||| Sbjct 21597 CTTAGAATCTGTTGTAAGAGATGCTGTTACA-TACACAGAACATGCCAGAAGAAAGACTG 21655 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 |||| | |||||| | || ||||| || ||| | ||||| | | |||||||||||| Sbjct 21656 TCACTGCTATGGATGTAGTATATGCCTTAAAAAGACAAGGAAGAACCCTTTATGGTTTTG 21715 Query 16692 GAA 16694 ||| Sbjct 21716 GAA 21718 >seq1230 Length=864525 Score = 113 bits (124), Expect = 7e-21 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| | ||||| | |||||| ||||||||| ||| || || |||||||| ||| Sbjct 499168 GCTAAGAGACATCGAAAGGTTCTTCGTGATAACATCAGAGGTATTACAAAGCCAGCCATC 499109 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||| | | ||||| || || ||| || ||| || | |||||||| | Sbjct 499108 CGTCGTCTTGCTAGAAGAGGTGGTGTAAAACGTATCAGTGGTTTAATTTATGAAGAAACC 499049 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| || ||| | ||| | | | ||| | |||||| | || || || Sbjct 499048 AGAGGTGTATTAAAGGTTTTCTTAGAATCTGTTGTAAGAGATGCTGTAACATACACAGAA 498989 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | | |||||||| || | |||||| | || ||||| || ||| | ||||| Sbjct 498988 CATGCCAGAAGAAAGACTGTTACTGCTATGGATGTAGTATATGCCTTAAAAAGACAAGGA 498929 Query 16673 CGTAAGATTTATGGTTTTGGAA 16694 | | ||||||||||||||| Sbjct 498928 AGAACCCTTTATGGTTTTGGAA 498907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073876083464