Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq181 111 1e-19 seq1421 109 5e-19 seq207 107 2e-18 >seq181 Length=610132 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || || | || || || | | Sbjct 522534 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522593 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| | || |||| ||| || |||||||| ||||| || || Sbjct 522594 GATACTATTGACAACGTCA---AGGCCAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 522649 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || || || || || ||||||||||||| | | ||| | | ||||| Sbjct 522650 TCAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTA 522709 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| ||||| |||||||| || ||||||||||| |||| | ||||| ||| Sbjct 522710 CAACATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGGA 522761 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || || | || || || | | Sbjct 522306 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522365 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| | || |||| ||| || |||||||| ||||| || || Sbjct 522366 GATACTATTGACAACGTCA---AGGCCAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 522421 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || || || || || ||||||||||||| | | ||| | | ||||| Sbjct 522422 TCAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTA 522481 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| |||||||| || ||||||||||| |||| | ||||| || Sbjct 522482 CAACATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGG 522532 >seq1421 Length=125447 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC-TGAAGCAAAA 25084 |||||| | || ||| | || || || | || || || || || | || | ||| || Sbjct 52124 GGTAAAACAATTACACTTGATGTAGAACCATCAGATACAATTGA-TAACGTAAAGGCTAA 52182 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 ||| || |||||||| |||||||| || ||||| | | |||||||| || ||||| Sbjct 52183 GATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTTGCTGGTAAACA 52242 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 ||||||||||| | || | |||||||| || |||||||||||||| || ||||| Sbjct 52243 ATTAGAAGATGGCAGAACATTATCTGATTACAACATCCAAAAAGAATCCACACTTCATTT 52302 Query 25205 AGTGCTAAGGCTAAGAGGAGGA 25226 ||| |||| ||||||| ||| Sbjct 52303 AGTCTTAAGATTAAGAGGTGGA 52324 >seq207 Length=264058 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC-TGAAGCAAAA 25084 ||||| ||||||| | || || ||| | || || || || || | || | ||| || Sbjct 251545 GGTAAGACCATCACCTTAGATGTCGAGCCATCAGATACAATTGA-TAACGTAAAGGCTAA 251487 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 ||| || |||||||| |||||||| || ||||| | | ||||| ||||| ||||| Sbjct 251486 GATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTCGCCGGTAAACA 251427 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 ||||||||||| | | || | ||||||||||| ||||||||||| || || || || Sbjct 251426 ATTAGAAGATGGTAGAACATTATCTGATTACAATATCCAAAAAGAATCAACACTTCACTT 251367 Query 25205 AGTGCTAAGGCTAAGAGGAGG 25225 ||| | || ||||||| || Sbjct 251366 AGTATTGAGATTAAGAGGCGG 251346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320352844120