Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq207 158 2e-33 seq1421 140 6e-28 seq181 140 6e-28 seq318 87.8 3e-12 seq218 87.8 3e-12 seq73 87.8 3e-12 >seq207 Length=264058 Score = 158 bits (174), Expect = 2e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||| ||||| || || || ||||||||||| || ||||| || | ||| || ||||| Sbjct 251360 CAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGATAATGTTCTACCATC 251419 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || |||||||| || | ||||||||| || |||||||| ||||| || || Sbjct 251420 TTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATC 251479 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| ||||| ||| || || || |||| || || || || ||||||||||| Sbjct 251480 TTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGACATCTAAGGTGATGGT 251539 Query 68429 TTTTCCC 68435 || ||| Sbjct 251540 CTTACCC 251546 >seq1421 Length=125447 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || || || ||||| |||||||||||||| ||||| || | ||| || |||||| Sbjct 52308 AAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCCATCT 52249 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || | ||||||||| || |||||||| ||||| || ||| Sbjct 52248 TCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT 52189 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| ||||| ||| || || || |||| || |||||| || | || || ||| Sbjct 52188 TGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACATCAAGTGTAATTGTT 52129 Query 68430 TTTCC 68434 || || Sbjct 52128 TTACC 52124 >seq181 Length=610132 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || ||||| || ||||| ||||| ||| || || |||||| Sbjct 522517 AACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCT 522458 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| ||||| || ||||| || | ||||||||| || || ||||| ||||| || ||| Sbjct 522457 TCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 522398 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || ||||||||| || || || || || ||| || || | ||| || ||| Sbjct 522397 TGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTT 522338 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || || || || ||||| Sbjct 522337 TTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || ||||| || ||||| ||||| ||| || || |||||| Sbjct 522745 AACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCT 522686 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| ||||| || ||||| || | ||||||||| || || ||||| ||||| || ||| Sbjct 522685 TCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 522626 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || ||||||||| || || || || || ||| || || | ||| || ||| Sbjct 522625 TGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTT 522566 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || || || || ||||| Sbjct 522565 TTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq318 Length=140907 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGc 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 69666 GCCCGTCTAGCTCAGTCGGTAGAGCGCTAGGCTCTTAACCTAGTGGTCGGGGGTTCGAGC 69725 Query 84516 ccc 84518 ||| Sbjct 69726 CCC 69728 >seq218 Length=113963 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGc 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 50581 GCCCGTCTAGCTCAGTCGGTAGAGCGCTAGGCTCTTAACCTAGTGGTCGGGGGTTCGAGC 50640 Query 84516 ccc 84518 ||| Sbjct 50641 CCC 50643 >seq73 Length=215396 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGc 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 100519 GCCCGTCTAGCTCAGTCGGTAGAGCGCTAGGCTCTTAACCTAGTGGTCGGGGGTTCGAGC 100578 Query 84516 ccc 84518 ||| Sbjct 100579 CCC 100581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921605718634560