Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq181 134 1e-26 seq207 86.0 5e-12 seq1421 84.2 2e-11 >seq181 Length=610132 Score = 134 bits (148), Expect = 1e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | ||| || |||||||||| ||||||||||| |||||||||||||| Sbjct 522535 ATACCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCA 522476 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| | | |||||| | ||| ||||||||| |||| | | ||||| || ||| Sbjct 522475 CTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGA 522416 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||| || || | | |||| || || | | ||| Sbjct 522415 GGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCA 522356 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG-GCTTAA-T 114390 || || | ||| | |||||||| || || ||||| ||||| || |||||| | |||| | Sbjct 522355 ACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCATGAGTTTAAGT 522296 Query 114391 TAT 114393 ||| Sbjct 522295 TAT 522293 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||| || |||||||||| ||||||||||| |||||||||||||| || | ||| | | Sbjct 522749 TCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACC 522690 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| ||||||||| |||| | | ||||| || |||||||| |||||||| Sbjct 522689 ATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTT 522630 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || ||| || || | | |||| || || | | ||| || || | ||| | Sbjct 522629 ATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAAT 522570 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || || ||||| ||||| || ||||| Sbjct 522569 AGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq207 Length=264058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || |||||| | || |||||| ||||| || | || ||||||||||| || |||||||| Sbjct 251342 AACACCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATC 251401 Query 114212 -GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | || || | | |||||| | ||||||||| ||| | || | | ||||| || | Sbjct 251402 AGATAAT-GTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTG 251460 Query 114271 GAGGAATGCCTTCTTTGTC 114289 | ||||| |||||||| || Sbjct 251461 GTGGAATACCTTCTTTATC 251479 >seq1421 Length=125447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 114148 TACAAATACCGCCACGT---AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 || ||||||| |||| | | ||| || |||||||| | || ||||||||||| |||| Sbjct 52334 TATAAATACCTCCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGT 52275 Query 114205 TGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGT 114263 ||||||| | | || || | |||||| | |||||||||||| | || | | ||| Sbjct 52274 TGTAATCAGATAAT-GTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGT 52216 Query 114264 TGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || ||||| |||||||| || Sbjct 52215 TGATCTGGTGGAATACCTTCTTTATC 52190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420126985678176