Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq181 100 7e-16 seq1421 87.8 4e-12 seq207 86.0 1e-11 >seq181 Length=610132 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || || || ||| || | || ||||||||||| || || ||||| Sbjct 522497 TTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAA 522438 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| ||||| || ||||||||||| || ||||| || || || Sbjct 522437 GATCAATCTTTGTTGA---TCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGAC 522381 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || |||| ||| || | ||| || || || || || || || || || || || || Sbjct 522380 GTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTT 522321 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 522320 AACAAAGATTTGCAT 522306 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || || || ||| || | || ||||||||||| || || ||||| Sbjct 522725 TTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAA 522666 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| ||||| || ||||||||||| || ||||| || || || Sbjct 522665 GATCAATCTTTGTTGA---TCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGAC 522609 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || |||| ||| || | ||| || || || || || || || || || || || || Sbjct 522608 GTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTT 522549 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 522548 AACAAAGATTTGCAT 522534 >seq1421 Length=125447 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | ||| | || | ||||| ||| |||||||||||| || || || | Sbjct 52324 TCCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 52265 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | || |||||||||||||| || || || |||| | |||||| ||| Sbjct 52264 TAATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 52205 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 52204 AATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTAC 52145 Query 288426 TTCGAGCGTGATCGTCTTCCC 288446 || || || || || || || Sbjct 52144 ATCAAGTGTAATTGTTTTACC 52124 >seq207 Length=264058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || || | | || | || |||||||||||||| || ||||| Sbjct 251381 TTCTTTTTGGATATTGTAATCAGATAATGTTCTACCATCTTCTAATTGTTTACCGGCGAA 251440 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | |||||| ||| || ||||||||||| ||||| || || || ||||| Sbjct 251441 AATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTAGCCTTTACGTT 251500 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || | ||| | || || || | ||||| ||||| || Sbjct 251501 ATCAATTGTATCTGATGGCTCGACATCTAAGGTGATGGTCTTACC 251545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632514461744