Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq181 122 8e-23 seq207 102 7e-17 seq1421 84.2 2e-11 >seq181 Length=610132 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| ||| | || ||||| || || || || ||||| |||| ||| || | Sbjct 522520 CTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCA 522461 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| || || || ||||| ||||||||| Sbjct 522460 TCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTA 522401 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| |||| || | || | || || | || || || || |||| Sbjct 522400 TCTTGAATTTTGGCCTTGA-CGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAAT 522342 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || ||||| ||||| |||||||| Sbjct 522341 AGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| ||| | || ||||| || || || || ||||| |||| ||| || | Sbjct 522748 CTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCA 522689 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| || || || ||||| ||||||||| Sbjct 522688 TCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTA 522629 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| |||| || | || | || || | || || || || |||| Sbjct 522628 TCTTGAATTTTGGCCTTGA-CGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAAT 522570 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || ||||| ||||| |||||||| Sbjct 522569 AGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq207 Length=264058 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| ||||||||||| ||||| | ||| || | Sbjct 251358 CTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGATAATGTTCTACCA 251417 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | ||||||| ||| || || || ||||| ||||||||| Sbjct 251418 TCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTA 251477 Query 45246 TCTTGAATTTT 45256 ||||| || || Sbjct 251478 TCTTGGATCTT 251488 >seq1421 Length=125447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| || || ||||| |||||||| || ||||| | ||| | | Sbjct 52311 CTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCCA 52252 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | ||||||| ||| || || || ||||| ||||||||| Sbjct 52251 TCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTA 52192 Query 45246 TCTTGAATTTT 45256 ||||| || || Sbjct 52191 TCTTGGATCTT 52181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995018742080