Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq181 100 2e-16 seq1421 84.2 2e-11 seq207 84.2 2e-11 >seq181 Length=610132 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||| |||||| || ||||| Sbjct 522306 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522365 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| ||||| || ||||| || | || ||||||| Sbjct 522366 GATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 522425 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||| || || || ||||| |||||| || |||| | ||||| ||| Sbjct 522426 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTACAAC 522485 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||| | || | || |||||||| |||| || || Sbjct 522486 ATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGGTAT 522535 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||| |||||| || ||||| Sbjct 522534 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522593 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| ||||| || ||||| || | || ||||||| Sbjct 522594 GATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 522653 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||| || || || ||||| |||||| || |||| | ||||| ||| Sbjct 522654 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTACAAC 522713 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| |||||||||||| | || | || |||||||| |||| || Sbjct 522714 ATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGG 522760 >seq1421 Length=125447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||| | || ||||| || |||||||| |||||| | ||| | | || Sbjct 52210 AGATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGCAGAACATTATCTGA 52269 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| ||||||||||| || || || | || ||||||||| |||| || Sbjct 52270 TTACAACATCCAAAAAGAATCCACACTTCATTTAGTCTTAAGATTAAGAGGTGG 52323 >seq207 Length=264058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||| | || || || || |||||||| |||||| || ||| | | || Sbjct 251459 AGATCAACAAAGATTGATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACATTATCTGA 251400 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || || ||||||||||| || || ||| | ||||| |||||| |||| || Sbjct 251399 TTACAATATCCAAAAAGAATCAACACTTCACTTAGTATTGAGATTAAGAGGCGG 251346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425397292668792