Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq181 147 4e-30 seq207 123 4e-23 seq1421 122 2e-22 >seq181 Length=610132 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | || | ||| || |||| ||||| ||| || Sbjct 522541 ATTTGCATACCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTG 522482 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | |||||| ||| |||||||| || || || || || ||||| |||||| Sbjct 522481 TAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGA 522422 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| ||||||| || | || ||||||||| Sbjct 522421 TCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTT 522362 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || |||||||| || || || ||||| ||||| |||||||| Sbjct 522361 GGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| | || | ||| || |||| ||||| ||| || || || Sbjct 522760 CCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTG 522701 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | |||||| ||| |||||||| || || || || || ||||| |||||||| ||||| Sbjct 522700 AGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGA 522641 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| ||||||| || | || ||||||||| | ||||| Sbjct 522640 ATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACA 522581 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||| || || || ||||| ||||| |||||||| Sbjct 522580 TCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq207 Length=264058 Score = 123 bits (136), Expect = 4e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | ||| | || | ||| | ||||| ||||| || || || Sbjct 251345 ACCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGA 251404 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| |||||| ||| ||||||||||| ||||| ||||| ||||| |||||||| || || Sbjct 251405 TAATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGG 251464 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| || || | |||| || ||| ||||| || | ||| || Sbjct 251465 AATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGAC 251524 Query 193313 TTCTAGAGTTATAGTTTTACC 193333 |||| || || || ||||| Sbjct 251525 ATCTAAGGTGATGGTCTTACC 251545 >seq1421 Length=125447 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| |||| | || | ||| | ||| | ||||| || || || || ||| Sbjct 52323 CCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGAT 52264 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| ||||||||||| || |||||||| ||||| |||||||| || || Sbjct 52263 AATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 52204 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| || || | |||| || ||| ||||| || | || || Sbjct 52203 ATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACA 52144 Query 193314 TCTAGAGTTATAGTTTTACCTGTTA 193338 || || || || ||||||||| ||| Sbjct 52143 TCAAGTGTAATTGTTTTACCTATTA 52119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899638116255360