Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1368 131 5e-25 seq1254 98.7 3e-15 seq1230 98.7 3e-15 seq478 98.7 3e-15 >seq1368 Length=372222 Score = 131 bits (144), Expect = 5e-25 Identities = 223/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 || |||| ||||||||||| ||||| || | | ||| || || || | ||| || || Sbjct 277097 TAGCAACTGCATCAATTTCATCAATAAATACAATACAAGGTGACTTCTTTCTTGCTTTTT 277038 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| || || || | || || | ||||||||||||||| ||||| |||||| Sbjct 277037 CAAACAAACTTCGCACTCTACTAGCACCTAAACCAACATACATTTCCACAAAATCAGAAC 276978 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | |||| | |||| ||||||||||| || ||| | || | || | | |||| Sbjct 276977 CAGACA-TTGATAAAAATGGGACATTTGCTTCACCAGCTGCAGCTTTTGCTAATAATGTC 276919 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| || ||||| || || ||||| | | || ||||||| | |||| || | Sbjct 276918 TTACCAGTACCAGGAGGACCAGATAATATAGCACCTTTTGGTATTCTTGCACC--TAATT 276861 Query 289267 TT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || |||||||||| ||||||| || || ||| |||| || ||| ||||| | Sbjct 276860 TTGAATATTTCTCACTATTCTTTAAGAAATCAACATATTCCATAATTTCCATCTTTGCTT 276801 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || || ||||| Sbjct 276800 CATCACAACCAGCAACATC 276782 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | ||||||||| ||||||||||| |||| || ||||| Sbjct 277323 CTATCAAATCTTCCTGGTCTTAATAATGCTGGATCTAATATATCAACTCTATTAGTTGCA 277264 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAA-AATTTGATT 288968 || || ||||| | || || ||| ||||| |||||||| | ||| ||| | || Sbjct 277263 GCTAAAACAACTACTGAATCTGTTGATTTAAAACCATCCATTTCTACTAATAATGCGTTT 277204 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 || ||| | ||| ||||||||||| ||||| Sbjct 277203 AA-TGTGTTTTCTCTTTCATCATTAGAACC 277175 >seq1254 Length=94524 Score = 98.7 bits (108), Expect = 3e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||||| || |||||||| | | ||||| |||||||| || | || | | | Sbjct 42494 TTTCTTACAGTTCTATCATAAGCTACTATAATATCTTCCATTGCTTTAACCAATCTATGT 42435 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||||||||| ||||| |||||||| |||||||| | ||| | | |||| || Sbjct 42434 TGAATATAACCAGTACGTGATGTCTTTACAGCAGTATCAATAATACCTTCTCTACCAGCC 42375 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 |||||||||||||| | |||| Sbjct 42374 ATAGCATGGAAGAAGAATTCTT 42353 >seq1230 Length=864525 Score = 98.7 bits (108), Expect = 3e-15 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 60191 GTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGA 60250 || |||||||| || ||| | |||| |||||| || ||| ||||| || || || Sbjct 412812 GTACCAAATTGACCTGATGGATATAATAAATTAATATTATTACTACCTACAAAGTTCTGT 412753 Query 60251 GCGAGACCAACAATAGCACCATT-TAAACTGGCTTCACCGTGATGATATCCAGAATGTTC 60309 || | || || |||| ||||| |||||| || ||||| |||||||| ||| ||| || Sbjct 412752 GCCATTCCTACTATAGTACCATGCTAAACTAGCATCACCATGATGATAAGCAGCATGCTC 412693 Query 60310 TGAAACATATCCACTGAATTGTGCGACTTTAATTTCGGA 60348 || ||||| ||| | ||||| || ||||||||||| || Sbjct 412692 AGAGACATAACCAGTTAATTGAGCAACTTTAATTTCAGA 412654 >seq478 Length=167017 Score = 98.7 bits (108), Expect = 3e-15 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 233608 TTTACCCATTAAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGG 233667 |||||| |||| | ||||| ||| ||| |||||||||||| ||| | ||| ||||| Sbjct 66618 TTTACCAGCTAAACTCTCTATTAACATACCAATAGTCATTCTAGATGGGAAAGCATGTGG 66559 Query 233668 ATTGATAATTAAATCTGGACGTACTCCCTCCGAT---GTAAAAGGCATATCTTTTTCAGG 233724 ||||||||| |||| ||| ||| | | | ||| ||||| ||||||||| ||| ||| Sbjct 66558 ATTGATAATACAATCAGGA-GTAATAC--CAGATTCAGTAAATGGCATATCTCTTTGAGG 66502 Query 233725 GATTATCAGTCCAACTGTTCCCTTTTGGCCGCATCTACTACAGAATTTATCACC 233778 || | | | ||| || ||||| || |||||||| |||||||||||| Sbjct 66501 CCATAATAATGATAATGTACCTTTTTGACCATGTCTACTACTGAATTTATCACC 66448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471790294103976