Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq181 145 6e-30 seq1421 113 3e-20 seq207 86.0 5e-12 >seq181 Length=610132 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | | ||| ||||| | || |||||||| |||||||| ||||| Sbjct 522761 TCCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACT 522702 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | | ||| || | ||| || ||||| | ||||||||||| ||||| || || Sbjct 522701 GAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGG 522642 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||| ||||| |||||| | ||||| | || | ||| ||| |||| | Sbjct 522641 AATACCTTCTTTATCTTG-AATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAA 522583 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || |||||||||||||| | |||||||||||| || ||||| Sbjct 522582 CATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | | ||| ||||| | || |||||||| |||||||| ||||| Sbjct 522532 CCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTG 522473 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||| || ||||| | ||||||||||| ||||| || ||| Sbjct 522472 AGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGA 522413 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||||| | || | ||| ||| |||| || Sbjct 522412 ATACCTTCTTTATCTTG-AATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAAC 522354 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||||||||| | |||||||||||| || ||||| Sbjct 522353 ATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 >seq1421 Length=125447 Score = 113 bits (124), Expect = 3e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| |||||||||||||| ||||| ||||| | | || | ||| || Sbjct 52305 ACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCCATCTTCT 52246 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | ||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 52245 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 52186 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || || | || | || || || ||||||| ||||| || || ||||| Sbjct 52185 ATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACATCAAGTGTAATTGTTTTA 52126 Query 29758 CC 29759 || Sbjct 52125 CC 52124 >seq207 Length=264058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || | || || || ||||| || ||||||||||| || || ||||| | Sbjct 251346 CCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGAT 251405 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| || || | ||||||||||| ||||| || ||| Sbjct 251406 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGA 251465 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| ||||| ||||| Sbjct 251466 ATACCTTCTTTATCTTG 251482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212401844168