Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1382 147 3e-30 seq788 95.1 2e-14 >seq1382 Length=24816 Score = 147 bits (162), Expect = 3e-30 Identities = 366/543 (67%), Gaps = 21/543 (4%) Strand=Plus/Plus Query 168592 TTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAG 168651 ||||| | | |||||||| | ||||| | ||| || ||||| | || ||| ||| Sbjct 14861 TTTGGGATGGCAATGGTTCAAGAGAATTCCTTGATAAATTAGGTTTAAAGGATAGAGAAG 14920 Query 168652 AAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTG 168711 ||||||||||||||| ||||||||||||||||| | ||| || ||| |||||| | Sbjct 14921 TGGGTGATTTAGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCTGAATATAAAG 14980 Query 168712 ACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTT 168771 ||| |||| ||||| || ||||||| |||||||| | || ||| | || Sbjct 14981 ACTTCAATACTGATTATACTAATAAAGGAGTTGACCAATTGAAGGAAGTAATAGAAACAA 15040 Query 168772 TACACAACAATCCGGAAAATAGAAGAATATTAATTAATAG-TTGGGAT-GTACCACAACT 168829 | | |||||||| || | ||||| | ||| | || |||| || || | | | Sbjct 15041 TTAAAAACAATCCAACGGATCGTAGAAT-TATATTGACAGCTTGGAATCCTAGTGCTA-T 15098 Query 168830 TGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTG-CAATTTTATGTAAGGAAAAAAT 168888 | |||||||| | || |||||||| | | ||| || |||||||||| | || | Sbjct 15099 TCCTAAAATGGCATTACCTCCTTGTCATA-TGATGTGTCAGTTTTATGTAA-GTAATGGT 15156 Query 168889 CAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATA 168948 | ||| ||||| |||||||||||||| ||| | |||||||| || || | || Sbjct 15157 GA--GTTATCATGTCAAATGTATCAAAGATCATGCGATATGGGATTAGGCGTTCCATTTA 15214 Query 168949 ATATTGGATTTTATTCATTTTTAACACTTGT----GCT-AAGTAAATGGTGTAATTTGAC 169003 |||| | || ||| ||||| || || || | ||| | || | ||| || | Sbjct 15215 ATATAGCATCTTACTCATTATTGACTATTTTAATCGCTCATGTTACTGG-----GTTAAA 15269 Query 169004 GCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACC 169063 || || ||||| | ||| | ||| ||| ||| || ||| ||||| ||||||| Sbjct 15270 ACCAGGTGAGTTTGTACATGTTACTGGTGATACTCATGTTTATAATAACCACATTGAACC 15329 Query 169064 TTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATTTATAGGTTT 169123 || || | ||||| || ||||| || ||| |||| ||||| || | | ||| | ||| Sbjct 15330 ATTGAAAGAACAATTAAAGAGAAATCCTTATCCTTTCCCAAAAGT--ATTGTATTGATTT 15387 Query 169124 ATT 169126 ||| Sbjct 15388 ATT 15390 >seq788 Length=386197 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 193482 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGT 193541 |||||||| ||| |||||||| |||| ||| ||||||||||| ||||| | |||| Sbjct 255102 CAAAAAGGTACTGTTGGTATGACTTATAGACAGGAAGATATGCCGTTTACTCGTCAAGGT 255043 Query 193542 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAA 193601 || ||| |||||||| |||||||| || ||||||||| | ||||| ||| |||| Sbjct 255042 ATTACACCTGATATTATGGTTAATCCACATGCTATTCCATCGCGTATGACTATTGGTCAA 254983 Query 193602 ATTATTG 193608 | |||| Sbjct 254982 TTAATTG 254976 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/243 (70%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 192878 TTCTATGGTTAAACAAGCCATTGG-ATTTATTC--CGTGTCACAACTTAAAAACGGAAAC 192934 ||| |||| ||||||||| || || |||||| | | | | | |||| || ||| || Sbjct 255748 TTCAATGGGTAAACAAGCAATGGGCATTTATGCATCTAATTATCAATTAAGAATGGATAC 255689 Query 192935 AGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGAT--ATTGCAAAA 192992 |||||||| ||| |||| || |||||||| ||||| || | | || | | Sbjct 255688 TTTATCTCATGTCTTATATTACCCTCAAAAACCTATTGTTTGTACTAAACCAATGGATTA 255629 Query 192993 TTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTAT 193052 |||| | | |||| |||| || |||| ||||| |||||| ||||| || ||| Sbjct 255628 TTTATTCT-TCAGACAATTA-CCTGCTGGTTGTAATGTTATTGTAGCTATTATGTGTTAT 255571 Query 193053 ACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTA 193112 | |||||||||||||||||| ||| | || | ||| || ||| ||||| ||||| || Sbjct 255570 AGTGGTTATAATCAAGAAGATAGTTTGATGATGAATCAAAGTTCCATTGATAGAGGTCTA 255511 Query 193113 TTT 193115 ||| Sbjct 255510 TTT 255508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635166103285440