Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1382 143 3e-29 seq788 95.1 2e-14 >seq1382 Length=24816 Score = 143 bits (158), Expect = 3e-29 Identities = 325/472 (69%), Gaps = 19/472 (4%) Strand=Plus/Plus Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 || ||| ||||||||||| ||| ||||||||||||||||| | ||| || ||| ||| Sbjct 14915 GAGAAGTGGGTGATTTAGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCTGAAT 14974 Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665 ||| |||| |||| | |||| |||| | |||||||| | |||| |||| Sbjct 14975 ATAAAGACTTCAATACTGATTATACTAATAAAGGAGTTGACCAATTGAAGGAAGTAATAG 15034 Query 180666 AAACTATAAAAAATAATCC--CGAATGCCGAAGAATAATCATAGATAG-TTGGAAT-GTA 180721 |||| || ||||| ||||| || || || ||||| || || || || ||||||| || Sbjct 15035 AAACAATTAAAAACAATCCAACGGAT--CGTAGAATTAT-ATTGACAGCTTGGAATCCTA 15091 Query 180722 TCACAATTACCAGATATGGCTCTTCCACCATGTCA-CTGTTTGGTACAATTTTATGTTAG 180780 | ||| || | ||||| | || || ||||| || | || || |||||||| Sbjct 15092 GTGCTATT-CCTAAAATGGCATTACCTCCTTGTCATATGATGTGT-CAGTTTTATGT--- 15146 Query 180781 AAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATC-TGCAGATTTAGGATTAGGTG 180839 || ||| | | ||| || ||| ||||||||||||| ||| ||| | |||||||| | Sbjct 15147 AAGTAATGGTGAGTTATCATGTCAAATGTATCAAAGATCATGC-GATATGGGATTAGGCG 15205 Query 180840 TACCATATAATATTGCTTTCTATTCATTTTTG-GTA-TGTGTTCTCTCAAAGTGGTGCAA 180897 | |||| |||||| || | || ||||| ||| || | | || |||| | || Sbjct 15206 TTCCATTTAATATAGCATCTTACTCATTATTGACTATTTTAATCGCTCATGTTACTG--G 15263 Query 180898 TTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATAT 180957 |||| || || | ||| | || | ||| ||| |||||| ||| |||||| || Sbjct 15264 GTTAAAACCAGGTGAGTTTGTACATGTTACTGGTGATACTCATGTTTATAATAACCACAT 15323 Query 180958 TGACCAATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCCAAAAGTA 181009 ||| | ||| ||| ||||||| ||||| ||||| || ||||||||| Sbjct 15324 TGAACCATTGAAAGAACAATTAAAGAGAAATCCTTATCCTTTCCCAAAAGTA 15375 >seq788 Length=386197 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 201578 AATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATG 201636 |||||| |||||||| | | || |||| | ||||||| ||| |||||||| |||| Sbjct 255133 AATTGGTGATAAATTCTCCAGTAGACATGGTC-AAAAAGGTACTGTTGGTATGACTTATA 255075 Query 201637 CACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTATAATCAATCCAA 201696 ||| ||||||||||||||||| | ||||| || || |||||||| | |||||| Sbjct 255074 GACAGGAAGATATGCCGTTTACTCGTCAAGGTATTACACCTGATATTATGGTTAATCCAC 255015 Query 201697 ATTGTATACCATCAAGAATGACCATAAATCAAATAATTG 201735 || ||| ||||| | ||||| || |||| |||||| Sbjct 255014 ATGCTATTCCATCGCGTATGACTATTGGTCAATTAATTG 254976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/243 (69%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 201005 TTCTATGGTTAAACAAGCTATAGGTTTTGTTCCATGTCA----CAACTTAAAAACTGAAA 201060 ||| |||| ||||||||| || || || | ||| | | ||| |||| || || | Sbjct 255748 TTCAATGGGTAAACAAGCAATGGGCATTTATGCATCTAATTATCAA-TTAAGAATGGATA 255690 Query 201061 CTGTATCACATACCTTAAATTATCCTCAAAAACCACTTGTTACAACTGA--CATTGCAGA 201118 || |||| ||| |||| |||| ||||||||||| ||||| ||| | || || | Sbjct 255689 CTTTATCTCATGTCTTATATTACCCTCAAAAACCTATTGTTTGTACTAAACCAATGGATT 255630 Query 201119 ATTTAATGGTCTAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTA 201178 ||||| | || | ||| || |||| ||||| |||||||| ||| ||||| Sbjct 255629 ATTTATTCTTCAGAC--AATTACCTGCTGGTTGTAATGTTATTGTAGCTATTATGTGTTA 255572 Query 201179 CACTGGATACAATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTT 201238 | ||| || ||||||||||||||| | || | ||| || || ||||| |||||| | Sbjct 255571 TAGTGGTTATAATCAAGAAGATAGTTTGATGATGAATCAAAGTTCCATTGATAGAGGTCT 255512 Query 201239 ATT 201241 ||| Sbjct 255511 ATT 255509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655268139432000