Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1382 138 1e-27 seq788 89.7 6e-13 seq1230 82.4 1e-10 >seq1382 Length=24816 Score = 138 bits (152), Expect = 1e-27 Identities = 355/527 (67%), Gaps = 23/527 (4%) Strand=Plus/Plus Query 171677 TTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAG 171736 ||||| ||| |||||||| | ||||| | ||| || || || | || ||| ||| Sbjct 14861 TTTGGGATGGCAATGGTTCAAGAGAATTCCTTGATAAATTAGGTTTAAAGGATAGAGAAG 14920 Query 171737 AAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCG 171796 ||||||||||||||| ||||||||||||||||| | ||| || ||| |||||| | Sbjct 14921 TGGGTGATTTAGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCTGAATATAAAG 14980 Query 171797 ACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATT-AAGTCAAACTATTA-ATAC 171854 ||| |||| ||||| || ||||||| |||||||| ||| || || || | || Sbjct 14981 ACTTCAATACTGATTATACTAATAAAGGAGTTGACCAATTGAAG--GAAGTAATAGAAAC 15038 Query 171855 TTTACAAAACAACCCA---GAAAGTAGAAGGATGTTAATTGATAG-TTGGAAT-GTACCT 171909 | ||||||| ||| || |||||| || ||||| || ||||||| || Sbjct 15039 AATTAAAAACAATCCAACGGATCGTAGAATTAT----ATTGACAGCTTGGAATCCTAGTG 15094 Query 171910 CAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaa 171969 | | || |||||||| | |||||||| || | | || |||||||| || || Sbjct 15095 CTA-TTCCTAAAATGGCATTACCTCCTTGTCATATGATGTGTCAGTTTTATGTAAG-TAA 15152 Query 171970 aaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCT 172029 | | ||| ||||| | |||||||||||| ||| | ||||| || || || Sbjct 15153 TGGTGA--GTTATCATGTCAAATGTATCAAAGATCATGCGATATGGGATTAGGCGTTCCA 15210 Query 172030 TATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAA--GTAAATGGTGC-AATTTA 172086 | |||||| | || ||| ||||| || | | | |||| | ||| | | ||| Sbjct 15211 TTTAATATAGCATCTTACTCATTATTGA---CTATTTTAATCGCTCATGTTACTGGGTTA 15267 Query 172087 ACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAA 172146 | ||||| ||||| | ||| | ||| ||| ||| || ||| || || ||||| Sbjct 15268 AAACCAGGTGAGTTTGTACATGTTACTGGTGATACTCATGTTTATAATAACCACATTGAA 15327 Query 172147 CCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGT 172193 || || || | |||||||| ||||| || ||| |||| ||||| || Sbjct 15328 CCATTGAAAGAACAATTAAAGAGAAATCCTTATCCTTTCCCAAAAGT 15374 >seq788 Length=386197 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 193035 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGT 193094 |||||||| ||| |||||||| |||| ||| ||||||||||| ||||| | |||| Sbjct 255102 CAAAAAGGTACTGTTGGTATGACTTATAGACAGGAAGATATGCCGTTTACTCGTCAAGGT 255043 Query 193095 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAA 193154 || ||| |||||||| |||||||| || |||||| || | ||||| ||| |||| Sbjct 255042 ATTACACCTGATATTATGGTTAATCCACATGCTATTCCATCGCGTATGACTATTGGTCAA 254983 Query 193155 ATTATTG 193161 | |||| Sbjct 254982 TTAATTG 254976 >seq1230 Length=864525 Score = 82.4 bits (90), Expect = 1e-10 Identities = 142/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||||||||||||||||| ||| ||||| | || || | | |||| | |||||||| Sbjct 412660 ATTAAAGTTGCTCAATTAACTGGTTATGTCTCTGAGCATGCTGCTTATCATCATGGTGAT 412719 Query 165220 CAAAATTTA-TGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 | |||| || |||||| | | || || | ||||| |||| |||||||| Sbjct 412720 GCTAGTTTAGCATGGTACTATAGTAGGAATGGCACAGAACTTTGTAGGTAGTAATAATAT 412779 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||| | | || |||||||||||||| |||||| ||| ||||||||| ||| Sbjct 412780 TAATTTATTATATCCATCAGGTCAATTTGGTACAAGATTATTAGGTGGTAAAGATAGTGC 412839 Query 165339 --GGCATCAAGATATATTTATAC 165359 | | || | ||||||||||| Sbjct 412840 AAGTCCTC--GTTATATTTATAC 412860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628519823585280