Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1442 165 2e-35 seq1382 145 2e-29 seq342 123 6e-23 seq983 118 3e-21 seq1151 107 5e-18 seq1254 96.9 8e-15 seq5 87.8 4e-12 >seq1442 Length=205139 Score = 165 bits (182), Expect = 2e-35 Identities = 470/710 (66%), Gaps = 39/710 (5%) Strand=Plus/Minus Query 167224 AATCTTT-ATTAATTATCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGT 167282 || |||| || ||| |||| | | | ||||||||||| || ||| ||| || || Sbjct 90276 AAGCTTTCATCAATACTCATCATAGCTCCAGCATTATCAAACTCACCACAATAGTTAGGA 90217 Query 167283 GCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACT 167342 ||||||||||| |||||||||| | || ||| ||||||||||||||||| || ||| Sbjct 90216 GCTGAAAATACCGTAACTAATTGTCTTTTAGCAAAGAATTCATAACCATCTTCTACCACT 90157 Query 167343 TCATGGGC---ACGTATTACAAGTTCAACTCCTAtttttttAAGAAAATTAGTTAAAGCA 167399 | ||| || || ||||| | | || || | || ||| ||| || || |||| || Sbjct 90156 TGATGCGCTCTACATATTAAATCT--AAATCATGTTCTTT-AAGGAACTTTGTTACGACA 90100 Query 167400 CGTAATCCAAATTTATAAC-TACAACCTCTTTCAGATTCAGAATAATAATCAATATCATG 167458 | ||||||| || || |||| ||||| ||| ||| | ||||||| Sbjct 90099 TCTGGTCCAAATGTAAAAGATACA-CCTCTATCATTCTCACCCCATCCCATAATATCA-- 90043 Query 167459 CGAT--GGATCCGCCCAAAGAAGATCGCATACCAACCCCTTATCAGGGATATCAATAGGT 167516 |||| ||||| ||||| | | |||||||| || || | || || | |||| | ||| Sbjct 90042 CGATCAGGATCTGCCCATAATAAATCGCATAATAATCCAGTCTCTGGTACATCAGTTGGT 89983 Query 167517 TTTTTAATCCTATTGATATCTTCTAATTTA--TTAATATCTTCAGTGATTCCACCATGAA 167574 || ||| | || || | ||| | || | ||||| ||| | | | |||||||| | Sbjct 89982 CTTACTATCTTTTTAATTTGTTCCA-TTGAGTTTAAT-TCTGGACTAAGACCACCATGCA 89925 Query 167575 CACAAAAAGCCAATGGATTATCAATTGTTATTCCAATGGTTGCAGCAATAGACATAGTGT 167634 || || |||| | || || | | ||||||| || | | | || Sbjct 89924 TACCGAA--------GATTCT------TTCATCTACTA-TTGCAGCGATTGGTAAACAGT 89880 Query 167635 CAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCATTCATCGT 167694 |||||||| | ||| || |||| | ||| || | | || || |||||||| | Sbjct 89879 TGAAAACATCTGTAAAAGTTCTCCATAATTTAATATTATATCTTCTCTTACATTCATCAT 89820 Query 167695 AAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAATTATGT 167754 |||| ||||| ||| ||| ||||||||||||||| ||||||||||||| | || Sbjct 89819 AAAATCCATATATTCTATTGATTGAAGCACATTCGTGATTGCCTCTTAATAAAAAGAAGT 89760 Query 167755 TATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTTAACAC 167814 | ||| | || |||| ||||| | || |||||||| |||| || Sbjct 89759 TCTTTGGGTATTTGATTTTATATGAAAACAATAAACATATAGTTTCTAAAGATTGCTTAC 89700 Query 167815 CTCTATCAACATAATCACCTAAAAATATATATTTA--TTTTGGTTTGAAGGATTATCTAG 167872 | | ||| |||||||| |||||||||| || ||| | |||| || || || | Sbjct 89699 CACGATCGACATAATCGCCTAAAAATAAGTAGTTAGCCTCTGGTGGGA---ATCCTCCA- 89644 Query 167873 TTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTA 167922 | || || ||| || |||||||| ||| ||||||||||| |||||||| Sbjct 89643 TATTCAAATAATCTT-AATAAATCGCTATATTGACCATGTGTATCACCTA 89595 >seq1382 Length=24816 Score = 145 bits (160), Expect = 2e-29 Identities = 395/594 (66%), Gaps = 22/594 (4%) Strand=Plus/Minus Query 58737 ATTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGAT 58796 ||||||| || | | ||||| || |||| ||||| |||| ||| ||| ||| ||| Sbjct 15343 ATTGTTCTTTCAATGGTTCAATGTGGTTATTATAAACATGAGTATCACCAGTAACATGTA 15284 Query 58797 GAACCAATCCAGGtttttttCCTGTCTTTTTACACATTATATGAAGCAATACGGAGTATG 58856 || | || |||||| || || | | |||| | | ||||| ||||| | Sbjct 15283 CAAACTCACCTGGTTTTAACCCAGTAACATGAGCGATTAAAATAGTCAATAATGAGTAAG 15224 Query 58857 AAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGAT 58916 | | |||||||| || | || | |||||| | | |||||| | ||| | || Sbjct 15223 ATGCTATATTAAATGGAACGCCTAATCCCATATCGCATGATCTTTGATACATTTG-ACAT 15165 Query 58917 TAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCA 58976 | | | | | ||| |||||||| ||||| | |||||||||||||| | ||||| Sbjct 15164 GATAACTCACCATTACTT--ACATAAAACTGACACATCATATGACAAGGAGGTAATGCCA 15107 Query 58977 TTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCAT 59036 ||||| |||| |||| |||||| || | || ||||| | |||| || | | Sbjct 15106 TTTTAGGAATAGCACTAGGATTCCAAGCTGTCAATATAATTCTACGATCCGTTGGATTGT 15047 Query 59037 TTTTAATAAGTTCT-TCACAATGTTTTATTTGGTCAAATCC---ATTAGTATATTCAGTA 59092 ||||||| |||| | || | || | |||||||| ||| ||||||||| |||||| Sbjct 15046 TTTTAATTGTTTCTATTAC-TTCCTTCAATTGGTCAACTCCTTTATTAGTATAATCAGTA 14988 Query 59093 TTGGCATCAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGA 59152 ||| || | |||| | | || ||| |||||||||||| ||||| || || || | | Sbjct 14987 TTGAAGTCTTTATATTCAGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCTAAA 14928 Query 59153 GTTC---CTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTA 59209 | |||| | || |||||||| ||||| |||||||||| ||| Sbjct 14927 TCACCCACTTCTCTA---TCCTTTAAACCTAATTTATCAAGGAATTCTCTTGAACCATTG 14871 Query 59210 CCATCCCAAATATGAACATTATTATCATTAAGAGAT--TTATTATCTGTTTTTCCAGATA 59267 |||||||||||||||| || || || | ||||| || || ||| | ||| | Sbjct 14870 CCATCCCAAATATGAATGTTCTTTTC--TGCGAGATGATTGGCATTTGTATCACCATTAA 14813 Query 59268 GAAACCATAACAATTCCTTAATGCAAAT--TTTCCAAGCAACtttttttGTTGT 59319 ||||||||| ||||||| | |||| | | ||||| ||| |||||||||| Sbjct 14812 TAAACCATAATAATTCCTCA--GCAACTCCTCTCCAAAATACTCTTTTTGTTGT 14761 >seq342 Length=223684 Score = 123 bits (136), Expect = 6e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||||||| |||||||||| ||| || ||| || |||| || | ||||| ||| Sbjct 104979 GATATTGTTGAGAGACATTTGATTGATAAAGATATTGTGTTGTTTAACCGTCAACCTTCA 104920 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCA-AAGTATTATCTGGATTGACATTTCG 305412 ||||||| |||||| || ||| | |||| | | || ||| |||| ||||| | Sbjct 104919 CTGCATAGAATGTCAATTATGTCACATATTGCTAGAATTATGCCTTGGAGA-ACATTGAG 104861 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 || |||| | ||| |||| | ||||||||||| ||||||||||| ||||| |||||||| Sbjct 104860 GTTTAATGAATGTGATTGTTCACCTTATAATGCTGATTTTGATGGTGATGAGATGAATAT 104801 Query 305473 GCATGTACCTCA 305484 |||||||| || Sbjct 104800 TCATGTACCACA 104789 >seq983 Length=19535 Score = 118 bits (130), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||||||| |||||||||| ||| || ||| || |||| || | ||||| ||| Sbjct 15329 GATATTGTTGAGAGACATTTGATTGATAAAGATATTGTGTTGTTTAACCGTCAACCTTCA 15270 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCA-AAGTATTATCTGGATTGACATTTCG 305412 |||||| |||||| || ||| | |||| | | || ||| |||| ||||| | Sbjct 15269 TTGCATAGAATGTCAATTATGTCACATATTGCTAGAATTATGCCTTGGAGA-ACATTGAG 15211 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 || |||| | ||| |||| | ||||||||||| ||||||||||| ||||| |||||||| Sbjct 15210 GTTTAATGAATGTGATTGTTCACCTTATAATGCTGATTTTGATGGTGATGAGATGAATAT 15151 Query 305473 GCATGTACCTCA 305484 |||||||| || Sbjct 15150 TCATGTACCACA 15139 >seq1151 Length=139702 Score = 107 bits (118), Expect = 5e-18 Identities = 192/271 (71%), Gaps = 17/271 (6%) Strand=Plus/Plus Query 72153 ATTCATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGG 72212 || ||| ||| | ||||||| ||||| ||||| ||||| ||| ||||||| ||| Sbjct 8007 ATCCATACCATTAATTACTTTACCAAATACAACATGTTTACCATTCAAATGTGAAGGAG- 8065 Query 72213 TGCAAGT-GTAATGAAGAATTGCGAGTT--ATTTGAATCAGGACCCGAGTTAGCCATAGA 72269 | | || ||||| |||||||| | || ||||| || ||||| |||||||||| Sbjct 8066 TACTTGTAGTAATAAAGAATTG--ACTTCCATTTGTATTTGGACCACTATTAGCCATAGC 8123 Query 72270 AACCAAACCTGCTTC--TGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCA 72327 | |||||| |||| |||| || ||| ||| || ||||| || || | ||||| Sbjct 8124 CAATAAACCTTCTTCCTTGAAA--TTCAATTTGAAGTTTTCATCATCGAATTTACCTCCA 8181 Query 72328 TATATACTTTGAC---CTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATA 72384 ||||| | || ||| ||||||| || | |||||||||||||||| ||| Sbjct 8182 TATATTGATATACTGCCTG---TTCCATCGCCATTAATTATATCACCTCCTTGAATCATG 8238 Query 72385 AAATTATTAATTACTCTATGGAAAGGAACAG 72415 || | ||||||||||| ||| ||||||||| Sbjct 8239 AAGTCTTTAATTACTCTGTGG-AAGGAACAG 8268 >seq1254 Length=94524 Score = 96.9 bits (106), Expect = 8e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| | ||||||||||| ||||| ||| || |||| ||||| ||| | ||||||| Sbjct 41099 TTCAACCGTCAACCATCACTCCATAAGATGAGCATCATGGGTCATAGAGTGAGAGTATTA 41158 Query 305396 TCTGGATTGACATTTCGATTAAA--TGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 | | ||||| ||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 41159 GATTATTCAACATTCAGATTAAATCTGTCAGT--TACAACACCTTATAATGCTGATTTTG 41216 Query 305454 ATGGAGATGAAATGAATATGCATGTA 305479 |||| |||||||||||| | || ||| Sbjct 41217 ATGGTGATGAAATGAATTTACACGTA 41242 >seq5 Length=269695 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 36148 TACAGAGACATTCGCTGTCGGAATCAACATGCCTACAAGAACAGTAGTGTTTACTGAACT 36207 ||| || ||||| ||| | || || || |||||| ||| | | |||| |||| || | Sbjct 228276 TACTGATACATTTGCTATGGGTATTAATATGCCTGCAAAAGCTGTAGCTTTTATGGAGAT 228217 Query 36208 TGAGAAGTTTGATGGAAAGGAAAAAAGAGTACTTTTACCATCTGAGTATACTCAGATCGC 36267 |||| ||||||||||| |||| |||| | || | | ||||||||| ||| || || Sbjct 228216 AAAGAAATTTGATGGAAAAGAAAGAAGATTTCTACAAACTGCTGAGTATATTCAAATGGC 228157 Query 36268 TGGTCGTGCTGGAAGACGAGGAAAAGATACCGTAGG 36303 || | ||||| ||| |||| |||||||| || || Sbjct 228156 AGGAAGAGCTGGTAGAAGAGGTAAAGATACAGTTGG 228121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186790781655528