Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq181 152 5e-32 seq207 114 1e-20 seq1421 109 5e-19 >seq181 Length=610132 Score = 152 bits (168), Expect = 5e-32 Identities = 176/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 |||||| ||||||| | ||||| ||||| | || || ||| | || || | || || Sbjct 522298 TTAAACT-CATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTT 522356 Query 25226 GAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 ||| | | |||||||| || | || || |||||| |||||||| ||||| || Sbjct 522357 GAACCAAGTGATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCT 522416 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || ||||| |||||| | || | || || || ||| | ||||||| ||||| | |||| Sbjct 522417 CCAGATCAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGT 522476 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| |||||||| || | ||||||||||||||||||||||| || Sbjct 522477 GATTACAACATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGG 522532 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || | || || ||| | | Sbjct 522534 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522593 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || |||||| |||||||| ||||| || || ||||| Sbjct 522594 GATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 522653 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || || ||| | ||||||| ||||| | |||| |||||||| Sbjct 522654 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTACAAC 522713 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||||| |||||||| || | ||||||||||||||||||||||| ||| Sbjct 522714 ATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGGA 522761 >seq207 Length=264058 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 25211 ATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGA 25269 ||||| | || ||||| |||| | ||||| || || | ||||| || || || Sbjct 251536 ATCACCTTAGATGTCGA-GCCATCAGATACAATTGATAACGTAAAGGCTAAGATCCAAGA 251478 Query 25270 TAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 25329 |||||| ||||| || || ||||| |||||| | |||| || ||| |||||| | ||||| Sbjct 251477 TAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTCGCCGGTAAACAATTAGAAGA 251418 Query 25330 TGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 || ||||| | ||||||||||| ||||||||||| || |||| ||||| || || Sbjct 251417 TGGTAGAACATTATCTGATTACAATATCCAAAAAGAATCAACACTTCACTTAGTATTGAG 251358 Query 25390 ATTGAGAGGAGG 25401 ||| ||||| || Sbjct 251357 ATTAAGAGGCGG 251346 >seq1421 Length=125447 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 |||||||| ||||| || || ||||| |||||| | |||| | || |||||| | ||| Sbjct 52190 GATAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAA 52249 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | |||||||| || |||||||||||||| |||||||||| ||| Sbjct 52250 GATGGCAGAACATTATCTGATTACAACATCCAAAAAGAATCCACACTTCATTTAGTCTTA 52309 Query 25388 AGATTGAGAGGAGGA 25402 ||||| ||||| ||| Sbjct 52310 AGATTAAGAGGTGGA 52324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086343791360