Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1382 246 2e-60 seq518 131 1e-25 seq182 129 5e-25 seq1256 127 2e-24 seq1255 127 2e-24 seq601 123 2e-23 >seq1382 Length=24816 Score = 246 bits (272), Expect = 2e-60 Identities = 431/619 (70%), Gaps = 14/619 (2%) Strand=Plus/Plus Query 40702 TAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAG 40761 |||| ||||||| | | ||||||| ||| |||| || ||| | ||||||||||| || | Sbjct 14759 TAACAACAAAAAGAGTATTTTGGAGAGGAGTTGCTGAGGAATTATTATGGTTTATTAATG 14818 Query 40762 GTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAG-TGCACATTTGGAATGCGCACAGT 40820 || ||| ||||| || | | |||||| || | | || |||||| ||| | || Sbjct 14819 GTGATACAAATGCCAATCATCTCGCAGAAA-AGAACATTCATATTTGGGATGGCAATGGT 14877 Query 40821 TCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCT 40880 || | | || | || |||| ||| | ||||| || | |||||| | ||||| Sbjct 14878 TCAAGAGAATTCCTTGATAAATTAGGTTTAAAGGATAGAGAAGTGGGTGATTTAGGTCCA 14937 Query 40881 GTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC-ACTATGTACTCTGATTA 40939 |||||||||||||| | ||| |||||||| || ||||| | ||| | | ||||||| Sbjct 14938 GTTTATGGATTTCAATGGCGTCATTTTGGTGCTGAATATAAAGACT-TCAATACTGATTA 14996 Query 40940 TACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCC-- 40997 ||| ||||||||| | || ||||| || || ||||| || |||||| | |||| Sbjct 14997 TACTAATAAAGGAGTTGACCAATTGAAGGAAGTAATAGAAACAATTAAAAACAATCCAAC 15056 Query 40998 -GATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATT 41056 ||| | || || |||||| || ||||| || | | | | | |||||||| Sbjct 15057 GGATCGTAGA---ATTATATTGACAGCTTGGAATCCTAGTGCTATTCCTAAAATGGCATT 15113 Query 41057 GCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATT 41116 || ||||||||| || | ||||||||||| || | |||||||| | ||||||||| | Sbjct 15114 ACCTCCTTGTCATATGATGTGTCAGTTTTATGTAAGTAATGGTGAGTTATCATGTCAAAT 15173 Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176 ||||||||||||| | || |||||| |||| || || ||||| ||||| ||| | | Sbjct 15174 GTATCAAAGATCATGCGATATGGGATTAGGCGTTCCATTTAATATAGCATCTTACTCATT 15233 Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236 | || | | || || || ||||| |||||||| ||||| ||||| ||| ||| Sbjct 15234 ATTGACTATTTTAATCGCTCATGTTACTGGGTTAAAACCAGGTGAGTTTGT--ACATGTT 15291 Query 41237 A--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGA 41294 | || ||| ||| |||| | ||| ||||| || || || | ||||||| | | || Sbjct 15292 ACTGGTGATACTCATGTTTATAATAACCACATTGAACCATTGAAAGAACAATTAAAGAGA 15351 Query 41295 AAACCTAGACCATTTCCAA 41313 || ||| || || |||| Sbjct 15352 AATCCTTATCCTTTCCCAA 15370 >seq518 Length=27667 Score = 131 bits (144), Expect = 1e-25 Identities = 395/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || |||||| || ||| || |||||| | ||||||| | ||| Sbjct 5429 ATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAGTAGAGTT 5488 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTA 19361 || | ||||| | | | | | |||| |||||| ||||| | || | || | || Sbjct 5489 TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATGTTATTATA 5547 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAG-TAAATTACTTACAA 19420 || | || |||||||| ||||||||||| || | || |||| |||| | | | Sbjct 5548 CGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCGTCAA-TTAGCTAAAGCATTGA--- 5603 Query 19421 AACAACCTC-----CCAAAATT-GTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTC 19474 | ||| ||||| || || | |||||| ||||||||| ||||||||||||||| Sbjct 5604 ---ATGCTCGTGAACCAAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGTAGGTC 5660 Query 19475 AATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG 19534 |||| |||| ||| | || || |||| || ||||| | |||||| | | | Sbjct 5661 AATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGAAATGG 5720 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | || ||| || || ||||| ||| | |||||| | || ||||||||||| || Sbjct 5721 GTGATAATAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTAAAGCAA 5780 Query 19595 GAGGT------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||| || || | ||| || ||||| | ||||||||||| | | ||| Sbjct 5781 GAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTATTAGCAA 5840 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || ||||| | | |||||||| | || |||| || ||||| ||| | | Sbjct 5841 AGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATCGTAAAG 5900 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | || || || || |||||| |||| ||| | || ||| | | || |||||| | Sbjct 5901 ATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAATTGGTT 5960 Query 19769 TACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAA 19828 | || |||||| ||| | | | || || || || |||||| | | ||| || | | Sbjct 5961 TGCCTGATGAAGCTGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGAGAGAGA 6020 Query 19829 ATAA 19832 |||| Sbjct 6021 ATAA 6024 >seq182 Length=52265 Score = 129 bits (142), Expect = 5e-25 Identities = 188/264 (71%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||||||| || | ||||||||||| || | |||||||| | ||||||||| ||||||| Sbjct 1 TTGTCATATGATGTGTCAGTTTTATGTAAGTAATGGTGAGTTATCATGTCAAATGTATCA 60 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 ||||||| | || |||||| |||| || || ||||| ||||| ||| | | | || Sbjct 61 AAGATCATGCGATATGGGATTAGGCGTTCCATTTAATATAGCATCTTACTCATTATTGAC 120 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA--GGA 41240 | | || || || ||||| |||||||| ||||| ||||| ||| |||| || Sbjct 121 TATTTTAATCGCTCATGTTACTGGGTTAAAACCAGGTGAGTTTGT--ACATGTTACTGGT 178 Query 41241 GATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCT 41300 ||| ||| |||| | ||| ||||| || || || | ||||||| | | |||| ||| Sbjct 179 GATACTCATGTTTATAATAACCACATTGAACCATTGAAAGAACAATTAAAGAGAAATCCT 238 Query 41301 AGACCATTTCCAACGCTACTTATT 41324 || || |||| || ||||| Sbjct 239 TATCCTTTCCCAAAAGTATTTATT 262 >seq1256 Length=7839 Score = 127 bits (140), Expect = 2e-24 Identities = 394/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || |||||| || ||| || |||||| | ||||||| | ||| Sbjct 1508 ATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAGTAGAGTT 1449 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTA 19361 || | ||||| | | | | | |||| |||||| ||||| | || | || | || Sbjct 1448 TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATGTTATTATA 1390 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAG-TAAATTACTTACAA 19420 || | || |||||||| ||||||||||| || | || |||| |||| | | | Sbjct 1389 CGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCGTCAA-TTAGCTAAAGCATTGA--- 1334 Query 19421 AACAACCTC-----CCAAAATT-GTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTC 19474 | ||| ||||| || || | |||||| ||||||||| ||||||||||||||| Sbjct 1333 ---ATGCTCGTGAACCAAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGTAGGTC 1277 Query 19475 AATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG 19534 |||| |||| ||| | || || |||| || ||||| | |||||| | | | Sbjct 1276 AATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGAAATGG 1217 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | || ||| || || ||||| ||| | |||||| | || ||||||||||| || Sbjct 1216 GTGATAATAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTAAAGCAA 1157 Query 19595 GAGGT------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||| || || | ||| || ||||| | ||||||||||| | | ||| Sbjct 1156 GAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTATTAGCAA 1097 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || ||||| | | |||||||| | || |||| || ||||| ||| | | Sbjct 1096 AGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATCGTAAAG 1037 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | || || || || |||||| |||| ||| | || ||| | | || |||||| | Sbjct 1036 ATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAATTGGTT 977 Query 19769 TACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAA 19828 | || |||||| || | | | || || || || |||||| | | ||| || | | Sbjct 976 TGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGAGAGAGA 917 Query 19829 ATAA 19832 |||| Sbjct 916 ATAA 913 >seq1255 Length=29917 Score = 127 bits (140), Expect = 2e-24 Identities = 394/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || |||||| || ||| || |||||| | ||||||| | ||| Sbjct 23074 ATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAGTAGAGTT 23015 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTA 19361 || | ||||| | | | | | |||| |||||| ||||| | || | || | || Sbjct 23014 TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATGTTATTATA 22956 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAG-TAAATTACTTACAA 19420 || | || |||||||| ||||||||||| || | || |||| |||| | | | Sbjct 22955 CGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCGTCAA-TTAGCTAAAGCATTGA--- 22900 Query 19421 AACAACCTC-----CCAAAATT-GTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTC 19474 | ||| ||||| || || | |||||| ||||||||| ||||||||||||||| Sbjct 22899 ---ATGCTCGTGAACCAAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGTAGGTC 22843 Query 19475 AATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG 19534 |||| |||| ||| | || || |||| || ||||| | |||||| | | | Sbjct 22842 AATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGAAATGG 22783 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | || ||| || || ||||| ||| | |||||| | || ||||||||||| || Sbjct 22782 GTGATAATAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTAAAGCAA 22723 Query 19595 GAGGT------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||| || || | ||| || ||||| | ||||||||||| | | ||| Sbjct 22722 GAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTATTAGCAA 22663 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || ||||| | | |||||||| | || |||| || ||||| ||| | | Sbjct 22662 AGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATCGTAAAG 22603 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | || || || || |||||| |||| ||| | || ||| | | || |||||| | Sbjct 22602 ATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAATTGGTT 22543 Query 19769 TACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAA 19828 | || |||||| || | | | || || || || |||||| | | ||| || | | Sbjct 22542 TGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGAGAGAGA 22483 Query 19829 ATAA 19832 |||| Sbjct 22482 ATAA 22479 >seq601 Length=19949 Score = 123 bits (136), Expect = 2e-23 Identities = 394/604 (65%), Gaps = 23/604 (4%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || |||||| || ||| || |||||| | ||||||| | ||| Sbjct 16601 ATTGGTGGTTTAGATAAAGAATTCAGTGATATATTTCGTCGTGCATTTGCTAGTAGAGTT 16660 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTA 19361 || | ||||| | | | | | |||| |||||| ||||| | || | || | || Sbjct 16661 TTCCCACCAGATATTGTCAGAAAGATGGG-TGTAAATCATGTAAGAGGTATGTTATTATA 16719 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAG-TAAATTACTTACAA 19420 || | || |||||||| ||||||||||| || | || |||| |||| | | | Sbjct 16720 CGGTGCTCCTGGTTGTGGTAAAACATTAATAGCTCGTCAA-TTAGCTAAAGCATTGA--- 16775 Query 19421 AACAACCTC-----CCAAAATT-GTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTC 19474 | ||| ||||| || || | |||||| ||||||||| ||||||||||||||| Sbjct 16776 ---ATGCTCGTGAACCAAAGTTAGTCAGTGGTCCAGAAATCTTAGATAAATATGTAGGTC 16832 Query 19475 AATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG 19534 |||| |||| ||| | || || |||| || ||||| | |||||| | | | Sbjct 16833 AATCTGAAGCTAATATTAGAGCATTATTTGAAGATGCTGAGAAGGAACAAGCAGAAATGG 16892 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | || ||| || || ||||| ||| | |||||| | || ||||||||||| || Sbjct 16893 GTGATAATAGTGAATTACATATTATTATATTTGATGAAATAGATGCAATCTGTAAAGCAA 16952 Query 19595 GAGGT------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||| || || | ||| || ||||| | ||||||||||| | | ||| Sbjct 16953 GAGGTAGTACCAGTGATGGTAGTGGTGTGCATGATTCAATTGTCAATCAATTATTAGCAA 17012 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || ||||| | | |||||||| | || |||| || ||||| ||| | | Sbjct 17013 AGATTGATGGTGTAGATTCATTGAATAATGTGTTGATTATGGGTATGACAAATCGTAAAG 17072 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | || || || || |||||| |||| ||| | || ||| | | || |||||| | Sbjct 17073 ATTTGATTGATCCTGCTTTATTAAGACCTGGTAGATTTGAAGTTCATATTGAAATT-GTT 17131 Query 19769 TACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAA 19828 | || |||||| || | | | || || || || |||||| | | ||| || | | Sbjct 17132 TGCCTGATGAAGCCGGCAGAATACAGATATTGAATATTCATACAGCTAAAATGAGAGAGA 17191 Query 19829 ATAA 19832 |||| Sbjct 17192 ATAA 17195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448985895240