Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq207 136 9e-27 seq1421 116 9e-21 seq181 100 7e-16 seq1448 98.7 2e-15 >seq207 Length=264058 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| || || ||||||||||||| ||||||||| | || ||||| || Sbjct 251357 TCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGATAATGTTCTACC 251416 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || || ||||| || | || |||||| || || ||||||||||| || Sbjct 251417 ATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 251476 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || || || || ||||| | || || ||||| ||||| Sbjct 251477 ATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGACATCTAAGGTGAT 251536 Query 225678 CGTCTTGCCC 225687 ||||| ||| Sbjct 251537 GGTCTTACCC 251546 >seq1421 Length=125447 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | || || |||||||||||||||| |||||||| | || ||||| || Sbjct 52312 TCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCC 52253 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||| || || | || |||||| || || ||||||||||| || Sbjct 52252 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 52193 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || || || || ||||| | ||| || || | || || Sbjct 52192 ATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACATCAAGTGTAAT 52133 Query 225678 CGTCTTGCC 225686 || || || Sbjct 52132 TGTTTTACC 52124 >seq181 Length=610132 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| |||||||| || | |||||||| | |||||| |||||||||| ||||| || Sbjct 522503 AGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACC 522444 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || |||||| || || ||||||||||| || ||||| || || ||| Sbjct 522443 AGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTT 522384 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || || || | ||| || || | || || || ||||| || | || Sbjct 522383 GACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGT 522324 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 522323 TTTAACAAAGATTTGCAT 522306 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| |||||||| || | |||||||| | |||||| |||||||||| ||||| || Sbjct 522731 AGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACC 522672 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || |||||| || || ||||||||||| || ||||| || || ||| Sbjct 522671 AGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTT 522612 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || || || | ||| || || | || || || ||||| || | || Sbjct 522611 GACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGT 522552 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 522551 TTTAACAAAGATTTGCAT 522534 >seq1448 Length=56290 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/137 (77%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || | ||| ||||| |||||||||||| |||||||||| | || | | Sbjct 3967 TGGTAAGGTTTTACGCGGACTATCAGATTAAACCACATGCTCCACCGCTAAAACTAG-TC 3909 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGC 7854 ||| || || |||||| ||| ||||||||||||||| || |||| |||| ||| |||| Sbjct 3908 CCGCCAATTCCTTTGATTTTCAACCTTGCGGTCGTACTAACCAGGCAGAATGTTTAACGC 3849 Query 7855 GTTAGCTTAATTAATAT 7871 || |||| ||||||| Sbjct 3848 GTAAGCT---TTAATAT 3835 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || | ||| ||||| |||||||||||| |||||||||| | || | Sbjct 17801 TGGTAAGGTTTTACGCGGACTATCAGATTAAACCACATGCTCCACCGCTAAAACTAGTCC 17860 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGC 7854 ||| || || |||||| ||| ||||||||||||||| || |||| |||| ||| |||| Sbjct 17861 CCGCCAATTCCTTTGATTTTCAACCTTGCGGTCGTACTAACCAGGCAGAATGTTTAACGC 17920 Query 7855 GTTAGCTTAATTAATAT 7871 || |||| ||||||| Sbjct 17921 GTAAGCT---TTAATAT 17934 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || | ||| ||||| |||||||||||| |||||||||| | || | Sbjct 52607 TGGTAAGGTTTTACGCGGACTATCAGATTAAACCACATGCTCCACCGCTAAAACTAGTCC 52548 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGC 7854 ||| || || |||||| ||| ||||||||||||||| || |||| |||| ||| |||| Sbjct 52547 CCGCCAATTCCTTTGATTTTCAACCTTGCGGTCGTACTAACCAGGCAGAATGTTTAACGC 52488 Query 7855 GTTAGCTTAATTAATAT 7871 || |||| ||||||| Sbjct 52487 GTAAGCT---TTAATAT 52474 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||||||| || |||||||||||||||||| | | |||||||| ||| | || | ||| Sbjct 3306 TTGAGAGATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAG-CTTTTTTAAAGCCAG 3364 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| ||||||| ||||||| |||||| |||||| || ||| ||| ||| Sbjct 3365 CAGTGAGGAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGA 3417 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||||||| || |||||||||||||||||| | | |||||||| ||| | || | ||| Sbjct 18463 TTGAGAGATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAG-CTTTTTTAAAGCCAG 18405 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| ||||||| ||||||| |||||| |||||| || ||| ||| ||| Sbjct 18404 CAGTGAGGAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGA 18352 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||||||| || |||||||||||||||||| | | |||||||| ||| | || | ||| Sbjct 51945 TTGAGAGATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAG-CTTTTTTAAAGCCAG 52003 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| ||||||| ||||||| |||||| |||||| || ||| ||| ||| Sbjct 52004 CAGTGAGGAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGA 52056 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 |||| || | | || || |||| ||||||||||| ||||||||||||| || ||||| | Sbjct 6250 TAGGAGTTATATAAAAGGGGGTTGCGACTGTTTATTAAAAACACAGGATTCTGCTAAATC 6309 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | || ||||||| |||||||| Sbjct 6310 GTAAGATGAAGTATAGGATCTGACAC 6335 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 |||| || | | || || |||| ||||||||||| ||||||||||||| || ||||| | Sbjct 15517 TAGGAGTTATATAAAAGGGGGTTGCGACTGTTTATTAAAAACACAGGATTCTGCTAAATC 15458 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | || ||||||| |||||||| Sbjct 15457 GTAAGATGAAGTATAGGATCTGACAC 15432 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 |||| || | | || || |||| ||||||||||| ||||||||||||| || ||||| | Sbjct 54890 TAGGAGTTATATAAAAGGGGGTTGCGACTGTTTATTAAAAACACAGGATTCTGCTAAATC 54949 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | || ||||||| |||||||| Sbjct 54950 GTAAGATGAAGTATAGGATCTGACAC 54975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192509075564912