Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq181 91.5 3e-13 seq1421 89.7 1e-12 >seq181 Length=610132 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| || ||||||||||| | |||||| |||||||||| Sbjct 522509 ATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTG 522450 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || |||||||| | || || || || | | || ||||| || ||||||||||| Sbjct 522449 CTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 522390 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||||| | || | | || ||| || || ||||| |||||||||||||| Sbjct 522389 GGCCTTGACGTTGTCAATAGTATC---ACTTGGTTCAACATCAAGGGTAATAGTTTTGCC 522333 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||| ||||| Sbjct 522332 AGTAAGGGTTTTAACAAAGATTTGCAT 522306 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| || ||||||||||| | |||||| |||||||||| Sbjct 522737 ATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTG 522678 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || |||||||| | || || || || | | || ||||| || ||||||||||| Sbjct 522677 CTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 522618 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||||| | || | | || ||| || || ||||| |||||||||||||| Sbjct 522617 GGCCTTGACGTTGTCAATAGTATC---ACTTGGTTCAACATCAAGGGTAATAGTTTTGCC 522561 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||| ||||| Sbjct 522560 AGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq1421 Length=125447 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | |||||| || || |||||||||||||||||||| | ||| ||||| || Sbjct 52312 TCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCC 52253 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || || || || | || || || || | | || ||||| || Sbjct 52252 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 52193 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || || || || | || | | ||||| ||||| ||||| ||||| Sbjct 52192 ATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACATCAAGTGTAAT 52133 Query 152069 AGTTTTGCC 152077 ||||| || Sbjct 52132 TGTTTTACC 52124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153799393739608