Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1256 143 4e-29 seq1255 143 4e-29 seq518 143 4e-29 seq1382 141 1e-28 seq601 134 2e-26 seq182 84.2 3e-11 >seq1256 Length=7839 Score = 143 bits (158), Expect = 4e-29 Identities = 365/554 (66%), Gaps = 20/554 (4%) Strand=Plus/Plus Query 155894 TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTC 155953 |||||| || || |||||||| || | | ||| || | |||||||||||||| || Sbjct 966 TTCATCAGGCAAACCAATTTCAATATGAACTTCAAATCTACCAGGTCTTAATAAAGCAGG 1025 Query 155954 GTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTAC 156013 ||||| || || | || |||||||| || || || | || || || || ||||| Sbjct 1026 ATCAATCAAATCTTTACGATTTGTCATACCCATAATCAACACATTATTCAATGAATCTAC 1085 Query 156014 ACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGCGTGGCGTTATCACCGC- 156072 ||| || || || | |||||||||||||| | | || ||| | || || | | Sbjct 1086 ACCATCAATCTTTGCTAATAATTGATTGACAATTGAATCATGCACACCACTACCATCACT 1145 Query 156073 -GT--------TT--TTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCC 156121 || || |||||| | |||||||||||||| || | |||| |||||| | Sbjct 1146 GGTACTACCTCTTGCTTTACAGATTGCATCTATTTCATCAAATATAATAATATGTAATTC 1205 Query 156122 GCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGTT 156181 || ||||| || ||| |||| ||| ||| ||| | || Sbjct 1206 ACTATTATCACCCATTTCTGCTTGTTCCTTCTCAGCATCTTCAAATAATGCTCTAATATT 1265 Query 156182 AGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGGG 156241 |||||| |||| ||| |||||||| | ||| | ||| ||||| | |||| || || Sbjct 1266 AGCTTCAGATTGACCTACATATTTATCTAAGATTTCTGGACCACTGACTAACTTT--GGT 1323 Query 156242 TCGTGAT--TTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGA 156299 || || || || |||| ||| | ||||| |||||||||||||| || |||||| Sbjct 1324 TCACGAGCATTCAATGCTTTAGCTAATTGACGAGCTATTAATGTTTTACCACAACCAGGA 1383 Query 156300 GGTCCGTATAACAATACTCCTTTTATATG-TTTACAACCTAATTTTTCAG-TTATTTCTA 156357 | |||||||| || | ||| ||| ||| |||||| || || |||| | || ||| Sbjct 1384 GCACCGTATAATAACATACCTCTTACATGATTTACACCC--ATCTTTCTGACAATATCTG 1441 Query 156358 CCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATC 156417 || | ||| ||||||||| | ||||| || | ||||||||||| || | Sbjct 1442 GTGGGAAAACTCTACTAGCAAATGCACGACGAAATATATCACTGAATTCTTTATCTAAAC 1501 Query 156418 CCCCCACACCCATT 156431 | || | ||||||| Sbjct 1502 CACCAATACCCATT 1515 >seq1255 Length=29917 Score = 143 bits (158), Expect = 4e-29 Identities = 365/554 (66%), Gaps = 20/554 (4%) Strand=Plus/Plus Query 155894 TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTC 155953 |||||| || || |||||||| || | | ||| || | |||||||||||||| || Sbjct 22532 TTCATCAGGCAAACCAATTTCAATATGAACTTCAAATCTACCAGGTCTTAATAAAGCAGG 22591 Query 155954 GTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTAC 156013 ||||| || || | || |||||||| || || || | || || || || ||||| Sbjct 22592 ATCAATCAAATCTTTACGATTTGTCATACCCATAATCAACACATTATTCAATGAATCTAC 22651 Query 156014 ACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGCGTGGCGTTATCACCGC- 156072 ||| || || || | |||||||||||||| | | || ||| | || || | | Sbjct 22652 ACCATCAATCTTTGCTAATAATTGATTGACAATTGAATCATGCACACCACTACCATCACT 22711 Query 156073 -GT--------TT--TTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCC 156121 || || |||||| | |||||||||||||| || | |||| |||||| | Sbjct 22712 GGTACTACCTCTTGCTTTACAGATTGCATCTATTTCATCAAATATAATAATATGTAATTC 22771 Query 156122 GCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGTT 156181 || ||||| || ||| |||| ||| ||| ||| | || Sbjct 22772 ACTATTATCACCCATTTCTGCTTGTTCCTTCTCAGCATCTTCAAATAATGCTCTAATATT 22831 Query 156182 AGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGGG 156241 |||||| |||| ||| |||||||| | ||| | ||| ||||| | |||| || || Sbjct 22832 AGCTTCAGATTGACCTACATATTTATCTAAGATTTCTGGACCACTGACTAACTTT--GGT 22889 Query 156242 TCGTGAT--TTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGA 156299 || || || || |||| ||| | ||||| |||||||||||||| || |||||| Sbjct 22890 TCACGAGCATTCAATGCTTTAGCTAATTGACGAGCTATTAATGTTTTACCACAACCAGGA 22949 Query 156300 GGTCCGTATAACAATACTCCTTTTATATG-TTTACAACCTAATTTTTCAG-TTATTTCTA 156357 | |||||||| || | ||| ||| ||| |||||| || || |||| | || ||| Sbjct 22950 GCACCGTATAATAACATACCTCTTACATGATTTACACCC--ATCTTTCTGACAATATCTG 23007 Query 156358 CCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATC 156417 || | ||| ||||||||| | ||||| || | ||||||||||| || | Sbjct 23008 GTGGGAAAACTCTACTAGCAAATGCACGACGAAATATATCACTGAATTCTTTATCTAAAC 23067 Query 156418 CCCCCACACCCATT 156431 | || | ||||||| Sbjct 23068 CACCAATACCCATT 23081 >seq518 Length=27667 Score = 143 bits (158), Expect = 4e-29 Identities = 365/554 (66%), Gaps = 20/554 (4%) Strand=Plus/Minus Query 155894 TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTC 155953 |||||| || || |||||||| || | | ||| || | |||||||||||||| || Sbjct 5971 TTCATCAGGCAAACCAATTTCAATATGAACTTCAAATCTACCAGGTCTTAATAAAGCAGG 5912 Query 155954 GTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTAC 156013 ||||| || || | || |||||||| || || || | || || || || ||||| Sbjct 5911 ATCAATCAAATCTTTACGATTTGTCATACCCATAATCAACACATTATTCAATGAATCTAC 5852 Query 156014 ACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGCGTGGCGTTATCACCGC- 156072 ||| || || || | |||||||||||||| | | || ||| | || || | | Sbjct 5851 ACCATCAATCTTTGCTAATAATTGATTGACAATTGAATCATGCACACCACTACCATCACT 5792 Query 156073 -GT--------TT--TTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCC 156121 || || |||||| | |||||||||||||| || | |||| |||||| | Sbjct 5791 GGTACTACCTCTTGCTTTACAGATTGCATCTATTTCATCAAATATAATAATATGTAATTC 5732 Query 156122 GCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGTT 156181 || ||||| || ||| |||| ||| ||| ||| | || Sbjct 5731 ACTATTATCACCCATTTCTGCTTGTTCCTTCTCAGCATCTTCAAATAATGCTCTAATATT 5672 Query 156182 AGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGGG 156241 |||||| |||| ||| |||||||| | ||| | ||| ||||| | |||| || || Sbjct 5671 AGCTTCAGATTGACCTACATATTTATCTAAGATTTCTGGACCACTGACTAACTTT--GGT 5614 Query 156242 TCGTGAT--TTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGA 156299 || || || || |||| ||| | ||||| |||||||||||||| || |||||| Sbjct 5613 TCACGAGCATTCAATGCTTTAGCTAATTGACGAGCTATTAATGTTTTACCACAACCAGGA 5554 Query 156300 GGTCCGTATAACAATACTCCTTTTATATG-TTTACAACCTAATTTTTCAG-TTATTTCTA 156357 | |||||||| || | ||| ||| ||| |||||| || || |||| | || ||| Sbjct 5553 GCACCGTATAATAACATACCTCTTACATGATTTACACCC--ATCTTTCTGACAATATCTG 5496 Query 156358 CCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATC 156417 || | ||| ||||||||| | ||||| || | ||||||||||| || | Sbjct 5495 GTGGGAAAACTCTACTAGCAAATGCACGACGAAATATATCACTGAATTCTTTATCTAAAC 5436 Query 156418 CCCCCACACCCATT 156431 | || | ||||||| Sbjct 5435 CACCAATACCCATT 5422 >seq1382 Length=24816 Score = 141 bits (156), Expect = 1e-28 Identities = 349/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 50295 AACAGATTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTT 50354 |||| ||| || |||| || || |||| | | |||||| | ||| | || || ||| | Sbjct 14743 AACACATTGCCATTATTAACAACAAAAAGAGTATTTTGGAGAGGAGTTGCTGAGGAATTA 14802 Query 50355 TTATGGTTCCTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAA--GTCCGTTCGTA 50412 |||||||| | | || ||||||| | || | ||| |||| | | ||| || Sbjct 14803 TTATGGTTTATTAATGGTGATACAAATGCC--AATCATCTCGCAGAAAAGAACATTCATA 14860 Query 50413 TATGGGACGCTCACGGTTCCAGATCAAATT--TAGATCGTTTAGGATTTAATTACAGAAA 50470 | ||||| | | ||||| ||| |||| | ||| ||||| || || | ||| | Sbjct 14861 TTTGGGATGGCAATGGTTCAAGAG--AATTCCTTGATAAATTAGGTTTAAAGGATAGAGA 14918 Query 50471 CAAAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACAT 50530 || |||||||| || ||||| || ||||||||| | |||||||| || || | Sbjct 14919 AGTGGGTGATTTAGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCTGAATATAA 14978 Query 50531 AAATTGCGACGTAAATTA--CGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACG 50588 | | | | | |||| | || | |||| || || ||| || | || | ||| Sbjct 14979 AGACTTCAATACTGATTATACTAA--TAAAGGAGTTGACCAATTGAAGGAAGTAATAGAA 15036 Query 50589 ACG-TTGAAAACAAACCCCGACG-ATCGGCGTATTTTAATGACCGCCTGGAATCCAACCG 50646 || || ||||||| || ||| |||| | ||| || |||| || |||||||| | | Sbjct 15037 ACAATTAAAAACAATCCA--ACGGATCGTAGAATTATATTGACAGCTTGGAATCCTAGTG 15094 Query 50647 ATATAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACA 50706 ||| | ||| | |||||||| |||||| | | ||||| ||||||| | | Sbjct 15095 CTATTCCTAAAATGGCATTACCTCCTTGTCATATGATGTGTCAGTTTTATGTAAGTAATG 15154 Query 50707 ATGTTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCA 50766 || ||||| |||||| |||||||||||| |||||||| ||||||||||| || | Sbjct 15155 GTGAGTTATCATGTCAAATGTATCAAAGATCATGCGATATGGGATTAGGCGTTCCATTTA 15214 Query 50767 ACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | |||| |||||| | ||||| || ||| |||||||| Sbjct 15215 ATATAGCATCTTACTCATTATTGACTATTTTAATCGCTCA 15254 >seq601 Length=19949 Score = 134 bits (148), Expect = 2e-26 Identities = 364/554 (66%), Gaps = 21/554 (4%) Strand=Plus/Minus Query 155894 TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTC 155953 |||||| || || | |||||| || | | ||| || | |||||||||||||| || Sbjct 17142 TTCATCAGGCAAAC-AATTTCAATATGAACTTCAAATCTACCAGGTCTTAATAAAGCAGG 17084 Query 155954 GTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTAC 156013 ||||| || || | || |||||||| || || || | || || || || ||||| Sbjct 17083 ATCAATCAAATCTTTACGATTTGTCATACCCATAATCAACACATTATTCAATGAATCTAC 17024 Query 156014 ACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGCGTGGCGTTATCACCGC- 156072 ||| || || || | |||||||||||||| | | || ||| | || || | | Sbjct 17023 ACCATCAATCTTTGCTAATAATTGATTGACAATTGAATCATGCACACCACTACCATCACT 16964 Query 156073 -GT--------TT--TTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCC 156121 || || |||||| | |||||||||||||| || | |||| |||||| | Sbjct 16963 GGTACTACCTCTTGCTTTACAGATTGCATCTATTTCATCAAATATAATAATATGTAATTC 16904 Query 156122 GCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGTT 156181 || ||||| || ||| |||| ||| ||| ||| | || Sbjct 16903 ACTATTATCACCCATTTCTGCTTGTTCCTTCTCAGCATCTTCAAATAATGCTCTAATATT 16844 Query 156182 AGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGGG 156241 |||||| |||| ||| |||||||| | ||| | ||| ||||| | |||| || || Sbjct 16843 AGCTTCAGATTGACCTACATATTTATCTAAGATTTCTGGACCACTGACTAACTTT--GGT 16786 Query 156242 TCGTGAT--TTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGA 156299 || || || || |||| ||| | ||||| |||||||||||||| || |||||| Sbjct 16785 TCACGAGCATTCAATGCTTTAGCTAATTGACGAGCTATTAATGTTTTACCACAACCAGGA 16726 Query 156300 GGTCCGTATAACAATACTCCTTTTATATG-TTTACAACCTAATTTTTCAG-TTATTTCTA 156357 | |||||||| || | ||| ||| ||| |||||| || || |||| | || ||| Sbjct 16725 GCACCGTATAATAACATACCTCTTACATGATTTACACCC--ATCTTTCTGACAATATCTG 16668 Query 156358 CCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATC 156417 || | ||| ||||||||| | ||||| || | ||||||||||| || | Sbjct 16667 GTGGGAAAACTCTACTAGCAAATGCACGACGAAATATATCACTGAATTCTTTATCTAAAC 16608 Query 156418 CCCCCACACCCATT 156431 | || | ||||||| Sbjct 16607 CACCAATACCCATT 16594 >seq182 Length=52265 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 50673 TGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAA 50732 |||||| | | ||||| ||||||| | | || ||||| |||||| |||||| Sbjct 2 TGTCATATGATGTGTCAGTTTTATGTAAGTAATGGTGAGTTATCATGTCAAATGTATCAA 61 Query 50733 AGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACG 50792 |||||| |||||||| ||||||||||| || || |||| |||||| | ||||| || Sbjct 62 AGATCATGCGATATGGGATTAGGCGTTCCATTTAATATAGCATCTTACTCATTATTGACT 121 Query 50793 TATTTGATCGCTCA 50806 ||| |||||||| Sbjct 122 ATTTTAATCGCTCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667063125938880