Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 seq108 192 7e-44 seq134 123 3e-23 seq110 82.4 9e-11 >seq3 Length=497493 Score = 206 bits (228), Expect = 3e-48 Identities = 504/754 (67%), Gaps = 8/754 (1%) Strand=Plus/Minus Query 53713 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 53772 ||| ||||| || || || ||||| | | |||| |||||| || || || ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 53773 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 53832 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 53833 ATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGAC 53892 ||| || ||| | || || || ||||| || |||||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 53893 ACGAGCCTTTAT-TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 53951 || || || | || ||| | |||| |||||||| | ||| | | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGAC 54010 |||| || | ||| | || | | | ||||| |||| ||| |||||||||| | Sbjct 139599 CAAAYTCTTTTCCGCTG-CACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || | | | || | || |||||||||||||| | |||||| ||||| || | |||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCA 54128 ||||||| | || ||||| || ||||| || |||||||| |||| | ||||| | | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGA 139423 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 ||| || |||||||| ||||| | ||| | | | | |||||||| || |||| Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 | ||||| | |||||| || || || ||||| | | ||| |||| | ||||||| Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | | ||| || || ||| || || || |||||||| | | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATC 139243 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || ||| || || | |||||||| ||||| |||||||| |||||| Sbjct 139242 CAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCG 139183 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 || ||| || |||| | || | ||||| || || | || || || | |||| Sbjct 139182 AAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTC 139123 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 | | || ||||| |||||||| || || ||||| Sbjct 139122 CAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 192 bits (212), Expect = 7e-44 Identities = 550/845 (65%), Gaps = 6/845 (1%) Strand=Plus/Minus Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 53845 |||||||| || ||||||||||| ||| ||||| || |||||| || | ||| | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 53846 GGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATT 53905 || || || ||||| | ||| || || | || || ||||| | |||| ||| Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGAATT 13090 Query 53906 ATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCT 53962 | || | | ||| |||| | ||||| | |||||| | ||||| | | Sbjct 13089 GT---TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGT 13033 Query 53963 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 || || | | || || || || || ||||||||||||| ||| |||| Sbjct 13032 CCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTG 12973 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082 |||| || |||| ||| || || ||||| ||||| |||| ||| | ||| | | Sbjct 12972 GCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCG 12913 Query 54083 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 54142 | || | ||||| || || || |||||| | || || | ||||| | ||| Sbjct 12912 CGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGC 12853 Query 54143 CACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 54202 || || |||||||| |||| || ||| || ||| ||| |||||||| | |||| Sbjct 12852 CAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTAT 12793 Query 54203 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 54262 | |||||||| || | || | |||||| || | || |||||||||| ||| ||||| Sbjct 12792 CKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTT 12733 Query 54263 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCC 54322 || || ||| | |||||||||||| || ||| ||||| || || ||||| Sbjct 12732 CCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCG 12673 Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382 || || || | ||||| | || | || || |||||||| || || || ||| Sbjct 12672 TACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCC 12613 Query 54383 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 54442 |||| | | |||||||| ||||| || | | ||||| || || || | | Sbjct 12612 TTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGG 12553 Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502 || || | || || || || || ||| || || || || ||||| | | Sbjct 12552 GTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGC 12493 Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || ||||| | |||||||| || ||||| ||||| |||||| ||| |||| ||| Sbjct 12492 TCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCT 12433 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 |||||||| || | || ||||||||||| || || | |||||||||||||| || Sbjct 12432 GCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAA 12373 Query 54623 TTGTA 54627 | ||| Sbjct 12372 TCGTA 12368 >seq134 Length=128537 Score = 123 bits (136), Expect = 3e-23 Identities = 267/391 (68%), Gaps = 20/391 (5%) Strand=Plus/Plus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 || || || || ||||||| |||||||| ||||| ||||| || | |||||||| ||| Sbjct 121576 CAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAACCGGGCATAAGG 121635 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | |||||| ||||| | ||||| |||| |||||||| || ||||| || || Sbjct 121636 CCTCTCTTTTTCAGCCAGTAAATGGAACAGAATGCACCAGAAAAAAAGATTCCCTCGACA 121695 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TC--ATGTATCCACTTTTG 24322 || || ||||| | || | ||| | | ||| | || ||||| | ||| Sbjct 121696 GCAGCGAAGGCCACGAGCCGTTCAGCGAAGGAAGCGTCGGATCCGATGTACCG----TTG 121751 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT-CTCTA-TA---GCATTAAAGAGA 24377 ||||| | |||||||||| ||| || | || | | | || || ||| || Sbjct 121752 GGCCCATTTTGCCTTCTTTT-----CAACGCTTGGTACGCGAGTATGCGCCGAAAATAGG 121806 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 | | | || || | | ||| |||||||||||||| | || || |||| | Sbjct 121807 AGCTCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTAAGTTTCTTGA 121866 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT-AC 24496 || ||| |||| ||||||||||||||||| ||||| |||| ||||||| | |||| || Sbjct 121867 TGGATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTCGGGCA-CTGTAAC 121925 Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCA 24527 ||| ||| |||| ||| || || |||||| Sbjct 121926 ATCTCGACAGAATCTTTCGGCCAAGTTTTCA 121956 >seq110 Length=137954 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| || |||||||| | || | ||||||||||| | || Sbjct 11472 CAGGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGG 11413 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| ||||| ||||| || |||||||| |||| |||| | | | || || || || Sbjct 11412 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAGCTCCCCGAGAAAAA 11354 Query 24254 AATTCCTTCTACTGCCGCAAA 24274 ||||| || || | |||||| Sbjct 11353 GATTCCCTCCAC-GACGCAAA 11334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713443749520