Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq110 389 4e-103 seq456 123 3e-23 seq141 114 1e-20 seq386 93.3 4e-14 >seq110 Length=137954 Score = 389 bits (430), Expect = 4e-103 Identities = 557/776 (72%), Gaps = 14/776 (2%) Strand=Plus/Plus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 ||||| |||||||||||||||||||| || |||||||||| || ||| | || || Sbjct 10920 TGTGGGAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCGGAAGAGATCGATCTCG 10979 Query 116697 CCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 | ||||| | ||| |||| ||| || |||||||||||| || ||||||| | Sbjct 10980 GCTCGGACATGGCCGATTGGGTCAAGC---TGTCCGACAACGAGCGACACTTCATCAGCC 11036 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG--CG 116811 || | |||||||| || || || ||||| ||||||||||| || |||| || | Sbjct 11037 ACATCCTGGCCTTCTTTGCGGCATCGGACGGGATCGTCAACGAAAACCTGGCACAGAACT 11096 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 || | | ||| | ||| | |||||| || |||||||||||||| |||||||| | Sbjct 11097 TTATGACC--GAGCTCCAGTCGCCCGAGGGACGCTGCTTCTACGGCTTCCAGATCGCGGT 11154 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | |||||||| | || ||| |||||||||||||||| | ||| || Sbjct 11155 GGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTACATCAAGGATTCCGA 11214 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 ||||||||||||| | | |||||||||| ||| | || ||||| | |||||| Sbjct 11215 GGAGAAGCTCCGTCTCCTCCACGCCATCGACACGGTCCCCTGCGTGCGGAAAAAGGCCCG 11274 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||| || | ||| || | || |||| ||| | ||||| || ||||| Sbjct 11275 CTGGGCCCTCCAGTGGTGCGACTCGGGAATGGCCAGCTTTGCGGAGCGGTGCGTCGCCTT 11334 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 | ||| ||||| |||| || ||||| || ||| |||||| |||||||||||||| Sbjct 11335 TTGCGTCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCGCCATCTTTTGGCTCAAGAA 11394 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 ||||||||||||||||||||| | || ||||||||||||||| | |||||||| || Sbjct 11395 GCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGACT 11454 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG-CGCGGCGC 117230 || |||||||||||||| |||| | ||| | |||| || | | | | | | | || Sbjct 11455 CCACTGCGACTTTGCCTGCATGCTCTACAACAAGCTGGT-CAACAAGCTCGCCCCCGAGC 11513 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 || || |||||| |||||| |||| |||| |||||| || ||| ||| ||| || | Sbjct 11514 GCATCGTGGAGATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTCAGCGACGCCC 11573 Query 117291 TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTC 117349 | ||||| || | || | || | |||| | ||| ||| |||||||||||| | Sbjct 11574 TCCCGGTAGAGCTCATCGGCATGAACT-CGAAGCTCATGCAGCAGTACATCGAGTTCTGC 11632 Query 117350 GCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 |||||| | |||||| ||| |||| | | | ||||||||| | || |||||||| Sbjct 11633 GCCGACCGCCTGCTGGTCGCCCTGGGTGCCCCAAAGCACTACCAGACCCCCAACCC 11688 >seq456 Length=31050 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || || ||||| || || || ||||| ||||||||| | ||||| ||| | ||||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | |||| |||| || || | ||||| || || || || | |||||||| Sbjct 6696 ACCATCGACAACG-TCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCA 6754 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || ||||||| || || || || |||| || | |||||||| | |||||||||||| Sbjct 6755 GCGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACAT 6814 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| |||| || || | ||| | |||||| |||| || Sbjct 6815 CCAGAAGGAATCCACCCTTCACTTGGTGCTTCGCTTGCGGGGAGG 6859 >seq141 Length=126064 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| |||| ||||| |||| | Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGA-GCCATC 116986 Query 40750 G-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | ||| | | |||| ||||| || || | ||||| || || ||||| |||| | Sbjct 116987 GGACACGATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATC 117045 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || || || || |||| || | || || || | || |||| Sbjct 117046 AGCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACA 117105 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| |||| |||||| | || |||| ||||| || || Sbjct 117106 ACATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGG 117154 >seq386 Length=39556 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || || |||||||| | ||||| ||| | | Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | ||| || || | ||||| || || ||||| | || | Sbjct 11721 TGATACCATTGATAACG-TGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATC 11779 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | || | || || || || ||||| |||| |||||| | | ||||||| Sbjct 11780 AGCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACA 11839 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| ||||| ||||||| || Sbjct 11840 ACATCCAAAAGGAATCCACGCTTCA 11864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212122176240