Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq386 96.9 5e-15 seq3 91.5 2e-13 >seq386 Length=39556 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| || || || || || || | || ||||| | Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || || || || ||||| || ||||||||||| Sbjct 11721 TGATACCATTGATAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 11780 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | |||||||| ||||| ||| | || || | || || || || || || Sbjct 11781 GCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 11840 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | || ||||| | ||| || |||| || || Sbjct 11841 CATCCAAAAGGAATCCACGCTTCACTTGGTCCTCCGTCTAAGAGGAGGAAT 11891 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || || ||||| || | || | || | Sbjct 11433 AATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTC 11492 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || ||||| || || ||||| || ||||||||||| Sbjct 11493 GGACACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCA 11552 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | |||||||| ||||| ||||| || ||| | | || || || || || Sbjct 11553 GCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAA 11612 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || || ||| |||| |||| | ||| | || || || || Sbjct 11613 TATTCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGTCTTCGTGGAGGAAT 11663 >seq3 Length=497493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || || |||||||||||| | ||||| ||||| ||||| Sbjct 135249 AAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAG 135308 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | || || || ||||| || || ||||| ||||| || | || Sbjct 135309 CAATTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCAC 135368 Query 124743 TTGGTTTTACGTTTACGAGGTGG 124765 |||||| | ||| | ||||| || Sbjct 135369 TTGGTTCTTCGTCTCCGAGGAGG 135391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755445621923200