Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq141 114 1e-20 seq456 102 9e-17 seq386 93.3 5e-14 >seq141 Length=126064 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || |||| |||||||||| ||| |||||||| || ||||||||| Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | ||||| || || || || || || ||||| || | || Sbjct 117095 CAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGG 117036 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGAT---T 43131 | | ||||||||| ||| || |||| ||| | | | |||||| |||| | Sbjct 117035 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTC---CGATGGCT 116980 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||||| |||||||| || || || || ||||| || ||||||||||| Sbjct 116979 CGACATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq456 Length=31050 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 || ||||| | || || | |||||| || | ||| ||||| || || ||||| || Sbjct 6862 TGCCCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 6803 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 ||| || || | || || | ||||| || || || ||||| ||||||||||||| Sbjct 6802 CTCAGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGA 6743 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTC 43132 || | | ||||||||| ||| || ||||| ||| | | | |||||| || ||| Sbjct 6742 GGAATTCCTTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCGATGGTGTCGGACGGTTC 6684 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180 ||| || | |||||||| ||||| || || ||||||||||| || || Sbjct 6683 CACGTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||||| ||| | ||||| || | ||| |||||||| || ||||| ||| Sbjct 11889 TCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACT 11830 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || || ||||| ||||| || || | || |||||| || | || Sbjct 11829 CAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGG 11770 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || || | | | | || || || ||| || Sbjct 11769 GATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAAC 11710 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| || || || || ||||| ||||||||||||||| Sbjct 11709 GTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||| |||| ||| |||||| ||||||||||| || Sbjct 11661 TCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCT 11602 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | || || | ||||| ||||| || || | || |||||| || | || Sbjct 11601 TAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGG 11542 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||||| ||| | || || |||| | | | ||||| | || | Sbjct 11541 GATTCCTTCCTTGTCC-TGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGA 11483 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| | |||||| || || ||||| || ||||| ||||||||||||||| Sbjct 11482 CATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| ||| || || || |||| || || ||||| ||||| || Sbjct 12080 TCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAG 12021 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || |||||||| || | || | | ||||||||| ||| || || | ||| Sbjct 12020 ATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTCA-CGTT 11962 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | | || | ||||||||| | || || || || || || |||||||| || Sbjct 11961 GTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCAC 11902 Query 43172 AAAGATTTGCATT 43184 ||||||||||||| Sbjct 11901 AAAGATTTGCATT 11889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571809744655720