Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq456 105 4e-18 seq386 82.4 5e-11 >seq456 Length=31050 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| |||||||||||| ||| ||| | || Sbjct 6844 AGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6785 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| ||||| || || || ||||| |||||||||||| || | | |||||||| Sbjct 6784 TCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTC- 6726 Query 34298 GCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || | ||| ||| || | | | || | |||| || ||| ||||||| ||||||| Sbjct 6725 -CTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGG 6667 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 | ||||| || || || || ||||| ||||| Sbjct 6666 TCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || |||| ||| | ||| ||| || || ||||||||||| Sbjct 12120 GAACCCTCCGCGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTC 12061 Query 34219 GGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 || | || ||| |||| |||| ||||| || || || || || |||||||| || Sbjct 12060 ACTCAAGGTG-CGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAG 12002 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATT 34337 || | | |||||||| ||||| ||| | | | | || | ||| | | || Sbjct 12001 GAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTT 11942 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || |||| || || || || || ||||| || ||||||||||| ||||| Sbjct 11941 CCACATCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067672753440