Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq108 194 4e-44 >seq108 Length=147947 Score = 194 bits (214), Expect = 4e-44 Identities = 634/971 (65%), Gaps = 18/971 (2%) Strand=Plus/Plus Query 248780 TCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAA 248839 || ||||| || || || ||| ||| ||||| |||||||||| ||||| ||| |||| Sbjct 12330 TCTTGGACAATGCCATCAACCACGACAACGATTTCGAGTACGATTACTTTGGTTTTAAAA 12389 Query 248840 CGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACA 248899 | || ||||| || || | || || | |||||||||||| |||||| ||| || Sbjct 12390 CCCTCGAGAAGTCCTACTTGCTYAAGCTCAATGGCAAGATCGCAGAACGACCACAGTGCA 12449 Query 248900 TGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGT 248959 |||||||||| || || || || |||||| ||||| || ||| | || | ||||| | Sbjct 12450 TGTTGATGCGCGTCGCCGTTGGAATTCACGGAGATGATATCGAGCGGGTCTTGGAGACCT 12509 Query 248960 ACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | | || | ||||| | | || |||||||||||||| |||||||||||||| | Sbjct 12510 ATAAAGGCCTCTCGGAACGATACTTCACCCATGCCACACCGACCCTCTTCAACGCCGGAA 12569 Query 249020 CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACG 249079 || |||| |||| || ||| || ||||| | | ||| | || ||||| |||| | Sbjct 12570 CCAACAACCCTCAGATGTCCTCTTGTTTTCTGTTGACAATGAAGGAAGACTCCATCGATG 12629 Query 249080 GCATTTATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCGGAATCGGT 249138 |||| || ||||| | | || || | || |||||| || | ||| || ||||| ||| Sbjct 12630 GCATCTACGACACAC-TCAAGAGCTGCGCCGTGATTTCGAAGTACGCAGGTGGAATTGGT 12688 Query 249139 CTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGT 249198 || | | |||||| || || | || ||||| || || || || Sbjct 12689 CTGGCAACCCACAACATTCGTGCCAGTAAATCCTACATTCGTGGAACCAACGGTACATCC 12748 Query 249199 GATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCC 249258 |||| ||||| ||| | | || ||| | ||||||| | | | || | |||| Sbjct 12749 AATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACACCGCCMGATACGTCGATCAGGGT 12808 Query 249259 GGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTG 249315 || || || ||||| | ||||| || ||||| |||||||| ||||| || Sbjct 12809 GGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGGAGCCCTGGCACGCAGATATCTTT 12868 Query 249316 GAGTTCCTGGA-CTTGAAAAAGAACAACGGCAACG-AGCTCATGAGAGCGCGTGACCTCT 249373 | || | || ||| ||| ||| |||| |||| ||| || | || ||||| | | Sbjct 12869 GCCTTTTTAGATCTTCGCAAA-AACCACGGGAACGAAGCCGAT-CGCGCACGTGATTTGT 12926 Query 249374 TCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 | ||| || ||| || | ||| |||||||| || ||||||||| |||| |||| Sbjct 12927 TTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTGTCAAGGCCAACGGGACATGGA 12986 Query 249434 CGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGAC 249492 || | | | ||| ||| ||||||| ||| |||| ||||| || ||| | Sbjct 12987 CGTTGATGTGTCCCGACGAGTGCCCCGG-TCTCCCCGATTGCCACGGACARGAGTTCAAG 13045 Query 249493 CAAGCCTATAAGAAATACGAATCCAACGGCA----TCGGCAAGACAATCAAGGCTC-GGA 249547 || || | || ||||| | |||| ||| ||| ||||| |||| | | | Sbjct 13046 GAATTGTACGAAAAGTACGAGAAAGAAGGCAAGGGTCGCCAA-ACAATTCAGGCGCAGCA 13104 Query 249548 CCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCA 249607 | | | || | | |||| || ||| | || ||||| || || ||| || Sbjct 13105 GCTCTGGTTCGCA-ATCTTGGACTCGCAGGTCGAAACAGGAACCCCTTACATGGTGTACA 13163 Query 249608 AAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATC 249667 | || |||||| |||| || |||| | | || ||||| || | || || | Sbjct 13164 AGGATCACTGCAACAACAAGTCGAATCAACAAAACTTGGGAACCATTCGTTGTTCGAACC 13223 Query 249668 TCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAA 249727 | ||| | ||| | |||| ||| | || ||||| | |||||| |||||||| || | Sbjct 13224 TATGTACCGAGATTGTTCAGTACACTTCTCCAGAGGAAACTGCCGTTTGCAACCTTGCCA 13283 Query 249728 GCATCAATCTC 249738 |||||| |||| Sbjct 13284 GCATCAGTCTC 13294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073751280362432