Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 205 1e-47 seq108 188 9e-43 >seq3 Length=497493 Score = 205 bits (226), Expect = 1e-47 Identities = 506/755 (67%), Gaps = 10/755 (1%) Strand=Plus/Minus Query 62951 TGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 63010 ||| ||||| || || || ||||| | | |||| |||||| || || || ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63070 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 63071 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63130 ||| || ||| | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 63131 TCGAGCCTTTAT-TATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 ||| || || | || ||| | | |||| |||||||| ||| | | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGAC 63248 | || || | ||| | || | | | | ||| |||| ||| |||||||||| | Sbjct 139599 CAAAYTCTTTTCCGCTG-CACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || | | | || | || |||||||||||||| | |||||| ||||| || | |||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCA 63366 ||||||| | || ||||| || ||||| || |||||||| |||| | ||||| | | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGA 139423 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 ||| || |||||||| ||||| | ||| | || | | |||||||| || |||| Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | ||||| | |||||| || || || ||||| | | ||| |||| | || || | Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 63487 ATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTAATTGATAGA 63545 | |||| ||||| ||| || | || || || |||||||| | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGAC-CCCCTAGCTCGAATATTGTGCACGCTCAAT 139244 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || ||||| || || ||| || || | |||||||| ||||| || ||||| ||||| Sbjct 139243 CCAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCC 139184 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || ||| || |||| | || | ||||| || || | || || |||| ||| Sbjct 139183 GAAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTT 139124 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 || | || ||||| |||||||| || || ||||| Sbjct 139123 CCAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 188 bits (208), Expect = 9e-43 Identities = 430/645 (67%), Gaps = 2/645 (0%) Strand=Plus/Minus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || || || ||||||||||||| ||| |||| |||| || |||| ||| || Sbjct 13011 GGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAAC 12952 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 || ||||| ||||| |||| ||| | ||| | || | || | ||||| || Sbjct 12951 AGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTGG 12892 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 || || |||||| | || || | ||||| | ||||| || |||||||| ||||| Sbjct 12891 TTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCA 12832 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 || ||| || ||| ||| |||||||| | ||||| |||||||| || | || Sbjct 12831 ATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACA 12772 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | |||||| || | || || || ||| |||| ||||| || || ||| | |||| Sbjct 12771 CGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACTG 12712 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 |||||||| || ||| ||||| ||||| ||||| || || || | ||||| Sbjct 12711 GCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAG 12652 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 | || | ||||| |||||||| || ||| || || |||| | | |||||||| Sbjct 12651 CTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAA 12592 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| || | | ||||| || || || | ||| || | || || || || Sbjct 12591 GAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAAG 12532 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || ||| || || || || |||| ||| | | | || ||||| | ||||| Sbjct 12531 TATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG-CTCGATATCATCTCCGTGAAT 12473 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 ||| || ||||| ||||| |||||| ||| |||| ||| | || ||| || | || Sbjct 12472 TCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGAGCTT 12413 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | ||||||||| || || | |||||||||||||| || | ||| Sbjct 12412 RAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808947880720