Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 223 3e-53 seq134 129 5e-25 >seq3 Length=497493 Score = 223 bits (246), Expect = 3e-53 Identities = 506/748 (68%), Gaps = 16/748 (2%) Strand=Plus/Minus Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTA 37764 ||||| ||||||||||| || ||||||| || |||| ||||| ||||| || |||||| Sbjct 139834 AGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAGATTA 139775 Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824 || || ||||||||| | ||| |||| || ||||| |||| | ||| |||||| Sbjct 139774 CTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTTATAT 139715 Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT 37884 || || || || |||||| ||| ||||| | || | ||| | ||||| || Sbjct 139714 AGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTCTCGG 139655 Query 37885 GCTTTAACGATC--GCTTTAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGTTA 37941 || | ||| || || |||| ||| | ||||||||| | ||||| || | | Sbjct 139654 GC---AGGCATCTGGCGAACATATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCTCA 139598 Query 37942 AAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 || || || || | | || || | || || |||| |||||||| ||| ||| Sbjct 139597 AAYTCTTTTCCGC-TGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTCCA 139539 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAA-TA 38059 | |||||| || ||||| |||| |||||| |||||||| | ||||| || ||||| || Sbjct 139538 GTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAG-GCCGTAAAATA 139480 Query 38060 AATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA-GAAAATCGAAT 38118 |||| | || | |||||| ||||| |||||| || || ||| ||| ||||| Sbjct 139479 GATCTCGAGCTCGCTGTTCTTCTTTCCCGTGGTTCTTT-TTCAGATTAAGAACGTCGAAA 139421 Query 38119 ATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCC 38178 || || | ||||| ||||| || |||| | | ||| || || | || ||||||| Sbjct 139420 ATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCCT 139361 Query 38179 TGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGAT 38238 |||| || ||||| |||| || || | | | |||||| || | ||||| || Sbjct 139360 TGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGGAA 139301 Query 38239 TTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCT 38298 | || | |||| || || ||| ||||||| ||||| | |||||| Sbjct 139300 GTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATCCA 139241 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 |||||||| ||| ||| ||||| | ||||||| | ||||| |||||| |||| || | Sbjct 139240 ATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCC--CG 139183 Query 38359 ATACTG--TCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTC 38416 | | || || || | ||| | | | |||||||| || | ||||| | |||| Sbjct 139182 AAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTC 139123 Query 38417 CGGCGTTAAATAATGTAGGAGATGCATG 38444 | | | ||||| ||||||||||||||| Sbjct 139122 CAGAATGAAATAGTGTAGGAGATGCATG 139095 >seq134 Length=128537 Score = 129 bits (142), Expect = 5e-25 Identities = 285/416 (69%), Gaps = 16/416 (4%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || |||||| |||||| | |||||||||| ||| ||||| || || ||||| ||||| Sbjct 121564 CAAGCAAAAGAACAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAA 121623 Query 11690 CCGGGCATCAATCCTCGtttttttATCCA--AAATATAGCAGCAAATGAACCAGAAAAGA 11747 |||||||| | |||| ||||| | ||| |||| | ||| |||| ||||||||| | Sbjct 121624 CCGGGCATAAGGCCTCTCTTTTTCAGCCAGTAAATGGAACAG--AATGCACCAGAAAAAA 121681 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTT--GTTGCTA 11803 | |||||||| ||||| || || || || | | ||| | | | | | | | | | Sbjct 121682 AGATTCCCTCGACAGCAGCGAAGGCCACGAGCCGTTCAGCGAAGGAAGCGTCGGATCCGA 121741 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA-GC 11862 || || || |||||| | || ||||||| |||| | | | ||| || Sbjct 121742 TGTA-CCGTTG---GGCCCATTTTGCCTTCTTTTCAACGCTTGGTAC-GCGAGTATGCGC 121796 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 ||||| || | | ||| | | | | | |||||||| || || |||| || Sbjct 121797 CGAAAATAGGAGCTCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTA 121856 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||||| ||| || ||||||| || ||||||||||||||||| ||||||||||| | Sbjct 121857 AGTTTCTTGATGGATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTC-GG 121915 Query 11983 ACACTGT-ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||||| ||||| | | |||||||| || || || ||| ||||| |||||| Sbjct 121916 GCACTGTAACATCTCGACAGAATCTTTCGGCCAAGTTTTCAACGACAATCCCATCA 121971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518363640560