Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 seq108 208 1e-48 seq134 125 9e-24 >seq3 Length=497493 Score = 210 bits (232), Expect = 3e-49 Identities = 505/754 (67%), Gaps = 8/754 (1%) Strand=Plus/Minus Query 65744 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 65803 ||| ||||| || || || ||||| | | |||| |||||| || || || ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 65804 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 65863 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 65864 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 65923 ||| || ||| | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 65924 TCGAGCCTTTAT-TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 65982 ||| || || | || ||| | |||| |||||||| | ||| | | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 65983 CGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGAC 66041 | || || | ||| | || | | | ||||| |||| ||| |||||||||| | Sbjct 139599 CAAAYTCTTTTCCGCTG-CACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || | | | || | || |||||||||||||| | |||||| ||||| || | |||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCA 66159 | ||||| | || ||||| || ||||| || |||||||| |||| | ||||| | | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGA 139423 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 ||| || ||||||| ||||| | ||| | || | | |||||||| || |||| Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 | ||||| | |||||| || || || ||||| | | ||| |||| | ||||||| Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 | ||||| || || ||| || || || |||||||| | | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATC 139243 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | ||||| || || ||| || || | |||||||| ||||| |||||||| |||||| Sbjct 139242 CAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCG 139183 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 || ||| || |||| | || | ||||| || || | || || || | |||| Sbjct 139182 AAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTC 139123 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 | | || ||||| |||||||| || || ||||| Sbjct 139122 CAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 208 bits (230), Expect = 1e-48 Identities = 558/847 (66%), Gaps = 10/847 (1%) Strand=Plus/Minus Query 65817 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 65876 |||||||| || ||||||||||| ||| ||||| || |||||| || | ||| | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 65877 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT 65935 || || || ||||| | ||| || || | || || ||||| | || | |||| || Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCT-GCGCCTGAAT 13091 Query 65936 TATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 65992 | | || | | ||| |||| | ||||| | |||||| | |||||| | Sbjct 13090 TGT---TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTG 13034 Query 65993 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 66052 ||| || | | || || || || || ||||||||||||| ||| |||| Sbjct 13033 TCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTT 12974 Query 66053 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGT 66112 |||| || |||| ||| || || ||||| ||||| |||| ||| ||||| | | Sbjct 12973 GGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGC 12914 Query 66113 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATG 66172 | || | ||||| || || || |||||| | || || | ||||| || Sbjct 12913 GCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTG 12854 Query 66173 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 66232 ||| || |||||||| ||||| || ||| || ||| ||| |||||||| | ||| Sbjct 12853 CCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTA 12794 Query 66233 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 66292 || |||||||| || | || | |||||| || | || |||||||||||||| ||||| Sbjct 12793 TCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGT 12734 Query 66293 CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 66352 || || ||| | ||| |||||||| || ||| ||||| ||||| ||||| Sbjct 12733 TCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGC 12674 Query 66353 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 66412 || || || | ||||| | || | || || |||||||| || || || || Sbjct 12673 GTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTC 12614 Query 66413 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 66472 | |||| | | |||||||| ||||| || | | ||||| || || || | Sbjct 12613 CTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAG 12554 Query 66473 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTG 66531 ||| || | || || || || || ||| || || || || |||| ||| | | | Sbjct 12553 GGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG 12494 Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591 || ||||| | |||||||| || ||||| ||||| |||||| ||| |||| || Sbjct 12493 -CTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTT 12435 Query 66592 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 66651 | |||||||| || | || | ||||||||| || || | |||||||||||||| | Sbjct 12434 CTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGT 12375 Query 66652 AGTTGTA 66658 | | ||| Sbjct 12374 AATCGTA 12368 >seq134 Length=128537 Score = 125 bits (138), Expect = 9e-24 Identities = 366/551 (66%), Gaps = 27/551 (5%) Strand=Plus/Plus Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229 || || || || ||||||| |||||||| ||||| ||||| || | |||||||| ||| Sbjct 121576 CAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAACCGGGCATAAGG 121635 Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289 || | |||||| ||||| | ||||| |||| |||||||| || ||||| || || Sbjct 121636 CCTCTCTTTTTCAGCCAGTAAATGGAACAGAATGCACCAGAAAAAAAGATTCCCTCGACA 121695 Query 36290 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCC-----ACTTTT 36344 || || ||||| | || | || | | || | ||| | |||| || || Sbjct 121696 GCAGCGAAGGCCACGAGCCGTTCAGCGAA---GGAAGCGTC--GGATCCGATGTACCGTT 121750 Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT-CTCTA-TA---GCATTAAAGAG 36399 | ||||| | |||||||||| ||| || | || | | | || || ||| || Sbjct 121751 GGGCCCATTTTGCCTTCTTTT-----CAACGCTTGGTACGCGAGTATGCGCCGAAAATAG 121805 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 | | | || || | | ||| |||||||||||||| | || || |||| Sbjct 121806 GAGCTCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTAAGTTTCTTG 121865 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT-A 36518 ||| ||| |||| ||||||||||||||||| ||||| |||| ||||||| | |||| | Sbjct 121866 ATGGATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTCGGGCA-CTGTAA 121924 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 | ||| ||| |||| ||| || || |||||| || || || ||| | || || | Sbjct 121925 CATCTCGACAGAATCTTTCGGCCAAGTTTTCAACGACAATCCCATCAGCCCCCGCGAAGA 121984 Query 36579 ACGCCAATA-CATGTTTTATAAAATATTTTTCGTTTGGTGTTAG--TTTATT-CCAATCA 36634 | |||| | |||| | || |||| || |||||| || || ||| || ||| || Sbjct 121985 ATGCCAGGACCATG-CTGATGAAATGCTTCTCGTTTTTCGTGAGGTTTTCTTGCCAGTCT 122043 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 | | ||| || | ||| | ||| || | |||||||| || || | || ||| Sbjct 122044 GTCAAGTCTGCCGACAAATCAATTTCATCGGCCGTCCAAAAGGAAGCTACATGCTGTTTG 122103 Query 36695 TACATATTCCA 36705 ||||| |||| Sbjct 122104 TACATGCTCCA 122114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658163758351160