Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq55 196 4e-45 >seq55 Length=197180 Score = 196 bits (216), Expect = 4e-45 Identities = 323/460 (70%), Gaps = 16/460 (3%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 ||||| | || |||| || | |||||| | || || || ||||||||| ||| Sbjct 129814 GGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTTGAGGTAG 129873 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC-GTGACGTGAGC 21007 ||||||||||| |||| ||||| || | || |||||| | |||| || ||||| || Sbjct 129874 ACGTGGGCGTCCCCCAGCGTGTGGACCAGCTC-CCCGGGCTTGCGCCCGGTCACGTGGGC 129932 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || | ||||||||| ||||||||||| ||||| || |||||||| ||||||||||| Sbjct 129933 CACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCCCATGTC 129992 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC-----CCGAG-CCACGTAAAACTG 21121 ||| |||| |||||||| |||||| | ||| | || | | ||||| ||||| Sbjct 129993 GGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTAGAACTG 130052 Query 21122 ACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCA 21181 |||| | ||| || || ||||| |||||| | ||| | | ||||||||| |||| Sbjct 130053 GCACAGCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCAGGCGCT 130112 Query 21182 CATAACGATGCGCCGATCGT---GGGGCCGCCTGTTAAT-TAGATCCACCACGTAACGCA 21237 ||| | ||| || || || | || || || | | | ||| ||| | || Sbjct 130113 CATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCAC----TCGGCCA 130168 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 ||||||| || ||||| || ||||| || || || ||||||| || ||||| | Sbjct 130169 GCTGGTCGACGCCCTGCCCGGTGTAGTCGGTGTGCATGTCCTTGTACTCGGCGCCAAAGT 130228 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 | | |||||| || ||||| || || ||||| |||||||| Sbjct 130229 GCCGCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTC 130268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770270341520