Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq386 98.7 1e-15 seq22 86.0 6e-12 seq141 84.2 2e-11 >seq386 Length=39556 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||||||| ||||| || ||||| || || || ||||| Sbjct 11432 CCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 11373 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | || || |||||| | |||| | |||||||| ||||| Sbjct 11372 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGA 11313 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | ||||| || Sbjct 11312 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACA 11253 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTG 139761 || | || | |||||||||||||| ||||||||||| || || Sbjct 11252 TCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || || |||||| |||||| | ||||||||| ||||| || ||||| ||||| ||| | Sbjct 203444 TGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCC-TGAAT 203386 Query 139679 TTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCC 139737 || || || | | || || |||||| ||||| || || | ||| | ||||| || Sbjct 203385 CTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCC 203326 Query 139738 GGTCAACGTTTTTACGAATAT 139758 |||||| ||||||||||| || Sbjct 203325 GGTCAATGTTTTTACGAAAAT 203305 >seq141 Length=126064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || |||| || || || | || || || ||||| ||||| ||||| ||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| || || | || || || ||| |||| |||||||||||||| || | Sbjct 117094 AGAGT--TCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTG 117037 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| || || | | || | ||||| | ||||| | Sbjct 117036 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGA 116977 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| ||||| | || || ||||| |||||||| Sbjct 116976 CATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057185320800