Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 230 3e-55 seq108 221 2e-52 seq110 100 4e-16 >seq3 Length=497493 Score = 230 bits (254), Expect = 3e-55 Identities = 531/790 (67%), Gaps = 8/790 (1%) Strand=Plus/Minus Query 79623 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAG 79682 ||| ||||| || || || ||||| | | |||| |||||| || ||||| ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 79683 GTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 79742 ||||| || | ||| ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 79743 ATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 79802 ||| || ||| | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 79803 TCGAGCCTTTAT-TATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 79861 ||| || || | || ||| | |||| ||||||||| | ||||| | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 | || || | ||| | || | ||||| |||| || |||||||||| || Sbjct 139599 CAAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTCC 139540 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 | | | |||| | || ||||||||||||||| | |||||| ||||| || | ||||| Sbjct 139539 AGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAATA 139480 Query 79982 GATCTCTGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCAT 80039 |||||| | || || || || ||||| || |||||||| |||| | ||||| | | Sbjct 139479 GATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGAA 139422 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| || |||||||| ||||| | ||| | || | | || || || || ||||| Sbjct 139421 AATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCC 139362 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | |||||| || || || ||||| | | ||| |||| | |||||||| Sbjct 139361 TTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGGA 139302 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219 ||||| || || ||| || || || |||||||| | | || Sbjct 139301 AGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATCC 139242 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 ||||| || || ||| || || | |||||||| ||||| |||||||| |||||| Sbjct 139241 AATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCGA 139182 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || ||| ||| |||| | || | ||||| || || | || || || | ||||| Sbjct 139181 AATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTCC 139122 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACG 80398 | || ||||| |||||||| || || ||||| || || || ||| | ||||| Sbjct 139121 AGAATGAAATAGTGTAGGAGATGCATGGGTAAAGTATCCCTCGCTCATATAG-TCGTACG 139063 Query 80399 TCTCAATAGC 80408 |||||| ||| Sbjct 139062 TCTCAAAAGC 139053 >seq108 Length=147947 Score = 221 bits (244), Expect = 2e-52 Identities = 577/874 (66%), Gaps = 10/874 (1%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || || || ||||| ||| ||||||||| || ||||||||||| ||| ||| Sbjct 13236 ATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTG 13177 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || |||||| || | ||| | || || || ||||| | ||| || || | || Sbjct 13176 TTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATT 13117 Query 79789 GCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTA 79844 || ||||| | || | |||| ||| | | | | ||| |||| | ||||| Sbjct 13116 GCGAACCAGAGCTGCT-GCGCCTGAATTGTT---TGGCGACCCTTGCCTTCTTTCTCGTA 13061 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTC 79904 | | || ||| | |||||| | ||| |||| | || || || ||||| Sbjct 13060 CTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTC 13001 Query 79905 AGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAAT 79964 ||||||||||||| ||| || | |||| || |||| ||| || || ||||| || Sbjct 13000 GGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGAT 12941 Query 79965 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 ||| |||| ||| | ||| | | | || | ||||| || || || ||| Sbjct 12940 CCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAG 12881 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 ||| | || || | ||||| | ||||| || |||||||| ||||| || |||| Sbjct 12880 ATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTT 12821 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || ||| ||| |||||||| | ||||| |||||||| || | || | |||||| || Sbjct 12820 GCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGG 12761 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 | || |||||||||||||| ||||| || || ||| | |||||||||||| || Sbjct 12760 GACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTT 12701 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 ||| ||||| ||||| ||||| || || || | ||||| | || | || Sbjct 12700 GTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGT 12641 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 || |||||||| || ||| || || |||| | | |||||||| ||||| || Sbjct 12640 GTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTG 12581 Query 80325 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 80384 | | ||||| || || || | ||| || | || || || || || ||| || Sbjct 12580 AGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGA 12521 Query 80385 CAGTAGATTGTACGTCT-CAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGA 80443 || || || |||| ||| | | | || ||||| | |||||||| || |||| Sbjct 12520 GAGGCCTTTATAGGTCTCCAAGACCCG-CTCGATATCATCTCCGTGAATTCCAACGGCGA 12462 Query 80444 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAG 80503 | ||||| |||||| ||| |||| ||| |||||||| ||| | || | |||||| | Sbjct 12461 CGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGG 12402 Query 80504 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 | || || | |||||||||||||| || | ||| Sbjct 12401 ACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTA 12368 >seq110 Length=137954 Score = 100 bits (110), Expect = 4e-16 Identities = 360/555 (65%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||| || |||||||| | || || ||||||||||| | || Sbjct 11472 CAGGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGG 11413 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || |||||||| |||| |||| || ||| || || || Sbjct 11412 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAGCTCCCCGAGAAAAA 11354 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 |||||| || || || |||||| || | ||| || | ||||| | || | | Sbjct 11353 GATTCCCTCCACGACGCAAAAGGCGACGCACCGCTCCGCAAAGCTGGC-CATTCCCGAGT 11295 Query 50139 ----CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| |||||| || || || || | ||| || ||||| | Sbjct 11294 CGCACCACTGGAGGGCCCAGCGGGCCTTTTTCCGCACGCAGGGGACCGTGTCGATGGCGT 11235 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 | |||| | || || | ||| || | || || ||||| | || || Sbjct 11234 GGAGGAGACGGAGCTTCTCCTCGGAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGG 11175 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| || ||||| || | || ||||| || |||||||| || | |||||| Sbjct 11174 TCTCCGAGTGGATGTTCTCCACCGCGATCTGGAAGCCGTAGAAGCAGCGTCCCTCGGGCG 11115 Query 50315 TCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 ||| | || || || || |||| || | ||||| || || || ||||| || Sbjct 11114 ACTGGAGCTCGGT-CATAA-AGTTCTGTGCCAGGTTTTCGTTGACGATCCCGTCCGATGC 11057 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||| || |||| | || | || || ||| |||||| | || || ||| Sbjct 11056 CGCAAAGAAGGCCAGGATGTGGCTGATGAAGTGTCGCTCGTTGTCGGACAGCTTGACCCA 10997 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| || || | ||| | |||||| | ||||| || || ||||| ||||| Sbjct 10996 ATCGGCCATGTCCGAGCCGAGATCGATCTCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTT 10937 Query 50493 TTTATACATATTCCA 50507 ||| ||||| | ||| Sbjct 10936 TTTGTACATTTCCCA 10922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258932782360