Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 221 2e-52 seq108 187 3e-42 >seq3 Length=497493 Score = 221 bits (244), Expect = 2e-52 Identities = 529/790 (67%), Gaps = 8/790 (1%) Strand=Plus/Minus Query 71706 TGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAG 71765 ||| ||||| || || || ||||| | | || | |||||| |||||||| ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 71766 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 71825 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 71826 ATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 71885 ||| || || | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 71886 TCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 71945 ||| || || ||| | |||| ||||||||| | ||||| | || Sbjct 139658 TCGGGCAGGCATCTGGCGAACATATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCTC 139599 Query 71946 GAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACATCAATGACC 72004 || || | ||| | ||| | | | ||||| |||| || |||||||||| || Sbjct 139598 AAAYTCTTTTCCGCT-GCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTCC 139540 Query 72005 ACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 72064 | | | |||| | | ||||||||||||||| | |||||| ||||| || | ||||| Sbjct 139539 AGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAATA 139480 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCAT 72122 |||||| | || || || || ||||| || |||||||| |||| | ||||| | | Sbjct 139479 GATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGAA 139422 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||| || |||||||| ||||| | ||| | || | | || ||||| || ||||| Sbjct 139421 AATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCC 139362 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | |||||| || || || ||||| | | ||| |||| | |||||||| Sbjct 139361 TTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGGA 139302 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACC 72302 | ||| || || ||| || || || ||||||||| | | || Sbjct 139301 AGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATCC 139242 Query 72303 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 72362 ||||| || || ||| || || | |||||||| ||||| |||||||| |||||| Sbjct 139241 AATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCGA 139182 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 || ||| || |||| | || | ||||| || || | || || || | ||||| Sbjct 139181 AATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTCC 139122 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACG 72481 | || ||||| |||||||| || || ||||| || || || ||| | ||||| Sbjct 139121 AGAATGAAATAGTGTAGGAGATGCATGGGTAAAGTATCCCTCGCTCATATAG-TCGTACG 139063 Query 72482 TCTCAATAGC 72491 |||||| ||| Sbjct 139062 TCTCAAAAGC 139053 >seq108 Length=147947 Score = 187 bits (206), Expect = 3e-42 Identities = 553/847 (65%), Gaps = 10/847 (1%) Strand=Plus/Minus Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 |||||||| || ||||||||||| ||| ||||| || |||||| || | || | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT 71897 || || || ||||| | ||| || || | || || ||||| | || | |||| || Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCT-GCGCCTGAAT 13091 Query 71898 TATATTCTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 | | | | | ||| |||| | ||||| | | || ||| | |||||| | Sbjct 13090 TGTTTG---GCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTG 13034 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 ||| || | | || || || || | ||||||||||| | ||| || | Sbjct 13033 TCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTT 12974 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | || || |||| ||| || || ||||| ||||| |||| ||| | ||| | | Sbjct 12973 GGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGC 12914 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | || | ||||| || || || |||||| | || || | ||||| | || Sbjct 12913 GCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTG 12854 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| || |||||||| ||||| || |||| || ||| ||| |||||||| | ||| Sbjct 12853 CCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTA 12794 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 || |||||||| || | || | |||||| || | || |||||||||| ||| ||||| Sbjct 12793 TCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGT 12734 Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGC 72314 || || ||| | |||||||||||| ||| ||| ||||| ||||| ||||| Sbjct 12733 TCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGC 12674 Query 72315 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 72374 || || || | ||||| | || | || || |||||||| || || || || Sbjct 12673 GTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTC 12614 Query 72375 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 72434 | |||| | | |||||||| ||||| || | | ||||| || || || | Sbjct 12613 CTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAG 12554 Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTG 72493 ||| || | || || || || || ||| || || || || |||| ||| | | | Sbjct 12553 GGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG 12494 Query 72494 ATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 || ||||| | || ||||| || ||||| ||||| ||||| ||| |||| || Sbjct 12493 -CTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTT 12435 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 | |||||||| ||| | || | ||||||||| || || | |||||||||||||| | Sbjct 12434 CTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGT 12375 Query 72614 AGTTGTA 72620 | | ||| Sbjct 12374 AATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129980225240