Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq141 111 2e-19 seq3 111 2e-19 seq386 107 2e-18 seq22 84.2 2e-11 >seq141 Length=126064 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || |||| || ||||| | || ||||| ||||| ||||||||||| ||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| || || | ||| || || ||| |||| |||||||||||||| || | Sbjct 117094 AGAGT--TCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTG 117037 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| || || || | | || | |||||||| || || | Sbjct 117036 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGA 116977 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 116976 CATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 111 bits (122), Expect = 2e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | ||| || |||| || ||||| ||||| ||||||||||||||| Sbjct 135391 CCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTC 135332 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | ||| || || ||| |||| |||||||| ||||| ||||| Sbjct 135331 AAGGTGCGTCCA-TCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 143077 TATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 135272 GATTCCTTCCTTGTC 135258 >seq386 Length=39556 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||||| |||| |||||||| ||||| || ||||| ||||| Sbjct 11432 CCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 11373 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| || |||||| | |||| | |||||||| ||||| Sbjct 11372 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGA 11313 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||||| || || || Sbjct 11312 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACA 11253 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTG 143181 || | || | |||||||||||||| ||||||||||| || || Sbjct 11252 TCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || ||||||| || ||||| || || ||||| || |||||| Sbjct 203635 CCTCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTC 203576 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || | ||| || |||||| | || ||||| |||||||||||||| Sbjct 203575 AAAGTACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGA 203516 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 203515 ATTCCTTCCTTGTC 203502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507007434889680