Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq110 201 2e-46 seq55 122 1e-22 >seq110 Length=137954 Score = 201 bits (222), Expect = 2e-46 Identities = 561/841 (67%), Gaps = 26/841 (3%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||||||||||||||||||| |||||||||| ||||| | |||||| ||||||| | Sbjct 10922 TGGGAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCGGAAGAGATCGATCTCGGC 10981 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||| || |||||||| | | || | || | |||||| | || || ||| Sbjct 10982 TCGGACATGGCCGATTGGGTCAAGC---TGTCCGACAACGAGCGACACTTCATCAGCCAC 11038 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 || ||||||||||||| | || || || ||||||||||| || ||| ||| | | Sbjct 11039 ATCCTGGCCTTCTTTGCGGCATCGGACGGGATCGTCAACGAAAACCTGGC-ACAGAACTT 11097 Query 125202 TCTCAA-GAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 | | | ||| | ||| || | |||| | || ||||| ||||| ||||| ||| | | Sbjct 11098 TATGACCGAGCT--CCAGTCGCCCGAGG-GACGCTGCTTCTACGGCTTCCAGATCGCGGT 11154 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 |||||| | |||||||| | ||||| || || |||| |||||| ||| | | Sbjct 11155 GGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTACATCAAGGATTCCGA 11214 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || | | ||| | |||| ||||||||||| || | | || |||||||| | Sbjct 11215 GGAGAAGCTCCGTCTCCTCCACGCCATCGACACGGTCCCCTGCGTGCGGAAAAAGGCCCG 11274 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | | |||| ||| | | | | | || || | || || || Sbjct 11275 CTGGGCCCTCCAGTGGTGCGACTCGGGAATGGCCAGCTTTGCGGAGCGGTGCGTCGCCTT 11334 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGA 125496 || ||| ||||| ||||| || ||||| || || |||| |||||||||||||||||| Sbjct 11335 TTGCGTCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCG-CCATCTTTTGGCTCAAGA 11393 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 ||||||| ||||||||||| ||| | |||||| | || || || |||||||| | Sbjct 11394 AGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGAC 11453 Query 125557 TACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC-CCGAGTGCAGATCC 125615 | ||||| ||||||||| | | || | |||| | ||| ||| | || | | || Sbjct 11454 TCCACTGCGACTTTGCC-TGC--ATGCTCTACAACAAGCTG-GTCAACAAGCTC-GCCCC 11508 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 | | | || | | ||||| ||| | ||||| || ||| | || || | Sbjct 11509 CGAGCGCA-----TCGTGGAGATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTC 11563 Query 125676 ACCGAATCCCTACCGGT-CAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 | ||| |||| ||||| ||| | || |||||||||| ||||| ||| ||||||| Sbjct 11564 AGCGACGCCCTCCCGGTAGAGC-TCATCGGCATGAACTCGAAGCTCATGCAGCAGTACAT 11622 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAA 125794 ||||| || || || || ||| || || || || ||| ||| | || Sbjct 11623 CGAGTTCTGCGCCGACCGCCTGCTGGTCGCCCTGGGTGCCCCAAAGCACTACCAGACCCC 11682 Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || |||||||| | ||| | || || || |||| |||||||||||||||||||| Sbjct 11683 CAACCCCTTTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAGACCAACTTTTTCGAGAA 11742 Query 125855 G 125855 | Sbjct 11743 G 11743 >seq55 Length=197180 Score = 122 bits (134), Expect = 1e-22 Identities = 320/473 (68%), Gaps = 14/473 (3%) Strand=Plus/Minus Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 || || | |||||||| ||||| || || ||||| || |||||| |||||| ||| || Sbjct 130276 ACCGAGAGGAGGGCGACCTGGGCCCCGTCTACGGCTTTCAGTGGCGGCACTTTGGCGCCG 130217 Query 70116 AGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAAT 70173 |||| ||| ||| | || ||||| | || ||||| || || || || | || Sbjct 130216 AGTACAAGGACATGC-ACACCGACTACACCGGGCAGGGCGTCGACCAGCTGGCCGAGTG- 130159 Query 70174 CATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 ||| |||| ||||| ||| || || | ||||| | ||| || | ||||| || Sbjct 130158 CATCGACAAGATCAAGCACAACCCGGAGGACCGCCGGATCCTCATGAGCGCCTGGAACCC 130099 Query 70234 TGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCG 70291 | | || || | ||||| || || || || ||| || | || ||||| ||| ||| Sbjct 130098 CTCCGCCCTGGACGAGATGGCCCTCCCCCCCTGCCACCTGCTGTGC-CAGTTCTACGTCG 130040 Query 70292 T-ACGATGGCAAATT--GTCA--TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCG 70346 |||| | | |||| ||| ||||| ||| || |||||||||||||| | Sbjct 130039 ACACGACCACCGACGAGGTCAGCTGCCACATGTACCAGCGGTCGGCCGACATGGGCCTGG 129980 Query 70347 GTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCG 70406 | || ||||| |||||||| ||||| | | |||||||| | | || ||| | |||| Sbjct 129979 GGGTCCCCTTCAACATTGCCAGCTACGCGCTCCTGACGCACCTCGTGGCCCACGTGACCG 129920 Query 70407 GCCTGAAAGCGCACG-AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCAC 70465 | | | |||| | | || | || ||||| | || ||||| ||||| || | || ||| Sbjct 129919 GGC-GCAAGCCCGGGGAGCTGGTCCACACGCTGGGGGACGCCCACGTCTACCTCAACCAC 129861 Query 70466 ATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 ||||||| | |||| ||| || || |||| || | | ||||||||||| Sbjct 129860 GTCGAGCCGCTCAAGGAGCAGCTGGAGCGGGCCCCCCGGGCCTTTCCCAAGCT 129808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049019699240