Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq386 111 1e-19 seq141 107 1e-18 seq456 102 6e-17 seq3 84.2 2e-11 >seq386 Length=39556 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || || ||||| || ||||| |||||||| | || | ||||| Sbjct 11414 ACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATCTTCC 11355 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| | || || || ||||||||||| ||||| Sbjct 11354 AATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGG 11295 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| | || ||||| || | || ||||| || || || || || Sbjct 11294 ATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTG 11235 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTG 15360 || |||| ||||||||| ||||| || Sbjct 11234 CCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || ||||| |||||||| || || | | | ||||||| Sbjct 12099 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTC 12040 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | ||| || || || ||||||||||| ||||| Sbjct 12039 CAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11980 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| || | || |||||||| ||| ||||| | ||||| || || Sbjct 11979 GATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || ||||| |||||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 >seq141 Length=126064 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || ||||| |||||||| || ||||| ||||||||||| || Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || || ||||| || || || | || | |||||| || || ||| Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| ||||| || ||| |||| || | || || || || | || || || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTC-CGATGGCTCGAC 116976 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| | || ||||| || || || || || || || || |||||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq456 Length=31050 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||||| || | | | || || Sbjct 6841 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCC 6782 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || | ||| || |||||| ||||||||||| ||||| Sbjct 6781 AATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 6722 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| | || || | || ||||| ||| ||| || || | ||| ||||| || Sbjct 6721 ATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTTG 6662 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTG 15360 || ||||| || ||||||||||| || Sbjct 6661 CCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq3 Length=497493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || ||||| |||||||||||||| | | | | ||||| Sbjct 135374 AACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGTCCATCTTC 135315 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || || || | || | ||||||||| || || |||||||| ||||| Sbjct 135314 CAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTCCTG 135255 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTT 15332 || ||| |||| || | || || || || | || || ||||| | || ||||| | Sbjct 135254 GATCTTGGTCTTGACGTTGTCAATAGTGTC-CGATGGCTCGACATCAAGAGTGATGGTCT 135196 Query 15333 TACCT 15337 ||||| Sbjct 135195 TACCT 135191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174348949159