Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq134 105 6e-18 >seq134 Length=128537 Score = 105 bits (116), Expect = 6e-18 Identities = 368/564 (65%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||| ||| || | |||||| |||| ||| ||||||||||| ||||| |||| | Sbjct 121564 CAAGCAAAAGAACAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAA 121623 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCA--AAATATAGCAGCAAACGAACCCGaaaaaa 13268 || |||||||| |||| ||||| | ||| |||| | ||| || | ||| ||||||| Sbjct 121624 CCGGGCATAAGGCCTCTCTTTTTCAGCCAGTAAATGGAACAG--AATGCACCAGAAAAAA 121681 Query 13269 aTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT 13328 | ||||| || || || || || || | | || |||| | | | | | | Sbjct 121682 AGATTCCCTCGACAGCAGCGAAGGCCACGAGCCGTTCAGCGAAGGAAGCGTCGGATC--- 121738 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA-TTTTCTAT-TGC 13386 | || || | |||||| ||||| || | || ||||| || || ||| || Sbjct 121739 CGATGTACCGTTGGGCCCATTTTGCCTTCTTTTCAACGC--TTGGTACGCGAGTATGCGC 121796 Query 13387 GTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 ||||| | | | || || || | ||| || ||||| ||||| || | || Sbjct 121797 CGAAAATAGGAGCTCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTA 121856 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 ||||| ||| || ||||||| || ||||| || ||||| || |||| ||||| | Sbjct 121857 AGTTTCTTGATGGATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTCGGG 121916 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 || ||| || | |||||||| || |||||||| || ||||| ||| | Sbjct 121917 CACTGTAACATCTCGACAGAATCTTTCGGCCAAGTTTTCAACGACAATCCCATCAGCCCC 121976 Query 13567 AGCaaaaaaaGCAAGTA-TGTGCTTAATAAAttttttttCGTTTTC-TGACAACTT-TAA 13623 || || || || || | |||| | |||| || | ||||| ||| || | Sbjct 121977 CGCGAAGAATGCCAGGACCATGCTGATGAAATGCTTCTCGTTTTTCGTGAGGTTTTCTTG 122036 Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 ||| |||| || ||| || ||||| | || || | |||||||| ||||| ||| Sbjct 122037 CCAGTCTGTCAAGTCTGCCGACAAATCAATTTCATCGGCCGTCCAAAAGGAAGCTACATG 122096 Query 13684 CTTCTTATACATCATCCATATATC 13707 || || ||||| |||||| ||| Sbjct 122097 CTGTTTGTACATGCTCCATAGATC 122120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430976627394798