Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq386 156 1e-32 seq22 105 2e-17 >seq386 Length=39556 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||||||| | || || | || | || ||||| || || || || |||||| Sbjct 11891 ATTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCA 11832 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || | |||||||| ||||| |||||||||||||| | ||||| |||||||| Sbjct 11831 CTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGT 11772 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| | || || || || | |||||| ||||| Sbjct 11771 GGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCA 11712 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || ||||||||||| ||||| || ||||| || |||||| Sbjct 11711 ACGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 154 bits (170), Expect = 3e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||| | || | |||||||| ||||| |||||| Sbjct 12086 GTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCA 12027 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||||||||| |||||||| || ||||| ||||| | || Sbjct 12026 GCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTC 11967 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| ||||| || || |||||||||||||||||||| || || Sbjct 11966 ACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTGAGCGTC 11907 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 11906 TTCACAAAGATTTGCATT 11889 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || || || | || || || ||||||||||| ||||| Sbjct 11663 ATTCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCG 11604 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||| || || || ||||| | ||| |||||||||||||| | ||||| |||||||| Sbjct 11603 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGT 11544 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||||||||| | || ||||| || | || || ||| || Sbjct 11543 GGGATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCG 11484 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || |||||||| || || || || || ||||| || |||||| Sbjct 11483 ACATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| |||| || | |||||||| || || ||||| ||||| Sbjct 11435 ATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 11376 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||| || || || ||||| | ||| |||||||||||||| | ||||| ||||| ||| Sbjct 11375 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGA 11316 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| | || ||||| || | ||| || ||| || Sbjct 11315 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCG 11256 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || | || || ||||| || || | |||||||| || ||||| Sbjct 11255 ACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq22 Length=300247 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| ||||||||||| || | || || ||||||||||| |||||||| || |||||||| Sbjct 203445 TTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAAT 203386 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 ||| | || ||||| || | ||| ||| ||| || || || | || || ||||| || Sbjct 203385 CTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCC 203326 Query 104533 AGTAAGTGTTTTTACAAATATCT 104555 || | ||||||||| || |||| Sbjct 203325 GGTCAATGTTTTTACGAAAATCT 203303 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| ||||| || |||||||| | ||| | ||| || Sbjct 203621 AAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAAAGTACGACCATC 203562 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| ||||||||||| || || | ||| ||||| ||||| |||||||| || || Sbjct 203561 CTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTCCTTCCTTGTC 203502 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || ||||| || | ||||| || ||||| || | || || | Sbjct 203501 TTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACATCCAAAGTGATTG- 203443 Query 104527 CTTACCAGTAA 104537 ||| |||| || Sbjct 203442 CTTTCCAGCAA 203432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151382187231092