Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudo-
nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq386 156 1e-32
seq22 105 2e-17
>seq386
Length=39556
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| |||||||| | || || | || | || ||||| || || || || ||||||
Sbjct 11891 ATTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCA 11832
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || | |||||||| ||||| |||||||||||||| | ||||| ||||||||
Sbjct 11831 CTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGT 11772
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||| ||||| | || || || || | |||||| |||||
Sbjct 11771 GGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCA 11712
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||||||| ||||| || ||||| || ||||||
Sbjct 11711 ACGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661
Score = 154 bits (170), Expect = 3e-32
Identities = 153/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| || || || || |||||| | || | |||||||| ||||| ||||||
Sbjct 12086 GTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCA 12027
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| ||||||||||| |||||||| || ||||| ||||| | ||
Sbjct 12026 GCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTC 11967
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | |||||| ||||| || || |||||||||||||||||||| || ||
Sbjct 11966 ACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTGAGCGTC 11907
Query 104543 TTTACAAATATCTGCATT 104560
|| ||||| || ||||||
Sbjct 11906 TTCACAAAGATTTGCATT 11889
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || || || | || || || ||||||||||| |||||
Sbjct 11663 ATTCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCG 11604
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
||| || || || ||||| | ||| |||||||||||||| | ||||| ||||||||
Sbjct 11603 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGT 11544
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||||||||| | || ||||| || | || || ||| ||
Sbjct 11543 GGGATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCG 11484
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || | || |||||||| || || || || || ||||| || ||||||
Sbjct 11483 ACATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| |||| || | |||||||| || || ||||| |||||
Sbjct 11435 ATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 11376
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
||| || || || ||||| | ||| |||||||||||||| | ||||| ||||| |||
Sbjct 11375 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGA 11316
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||| ||||| | || ||||| || | ||| || ||| ||
Sbjct 11315 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCG 11256
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
|| || | || || ||||| || || | |||||||| || |||||
Sbjct 11255 ACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209
>seq22
Length=300247
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472
||| ||||||||||| || | || || ||||||||||| |||||||| || ||||||||
Sbjct 203445 TTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAAT 203386
Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532
||| | || ||||| || | ||| ||| ||| || || || | || || ||||| ||
Sbjct 203385 CTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCC 203326
Query 104533 AGTAAGTGTTTTTACAAATATCT 104555
|| | ||||||||| || ||||
Sbjct 203325 GGTCAATGTTTTTACGAAAATCT 203303
Score = 93.3 bits (102), Expect = 1e-13
Identities = 136/191 (71%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | || ||||| ||||| || |||||||| | ||| | ||| ||
Sbjct 203621 AAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAAAGTACGACCATC 203562
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | ||| ||||||||||| || || | ||| ||||| ||||| |||||||| || ||
Sbjct 203561 CTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTCCTTCCTTGTC 203502
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| | || ||||| || | ||||| || ||||| || | || || |
Sbjct 203501 TTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACATCCAAAGTGATTG- 203443
Query 104527 CTTACCAGTAA 104537
||| |||| ||
Sbjct 203442 CTTTCCAGCAA 203432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151382187231092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |