Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq55 196 3e-45 seq157 82.4 5e-11 >seq55 Length=197180 Score = 196 bits (216), Expect = 3e-45 Identities = 331/477 (69%), Gaps = 8/477 (2%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| | ||| ||| ||| ||||| ||| ||||| || ||||| | |||| Sbjct 129812 TGGGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTTGAGGT 129871 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 ||||||| ||||| ||||| |||||||| | ||| || || | ||||||| |||| | Sbjct 129872 AGACGTGGGCGTCCCCCAGCGTGTGGACCAGCTCCCCGGGCTTGCGCCCGGTCACGTGGG 129931 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 ||| | || ||| ||||| ||||||||| ||||| ||||| ||||| | ||||||| Sbjct 129932 CCACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCCCATGT 129991 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTC------ACGTAAAAC 25620 | |||||| |||||| | || || || ||| ||| | || ||||| ||| Sbjct 129992 -CGGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTAGAAC 130050 Query 25621 TGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCG 25680 || |||| || ||| || || || || || | ||| | | |||||||||||| Sbjct 130051 TGGCACAGCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCAGGCG 130110 Query 25681 CACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGC 25740 | || || ||| | | ||| || ||||||| | |||| || | | |||| Sbjct 130111 CTCATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCACTCGGCCAGC 130170 Query 25741 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATAC 25800 || || || ||| ||| | |||||| | ||||||| ||||||| || || || | | Sbjct 130171 TGGTCGACGCCCTGCCCGGTGTAGTCGGTGTGCATGTCCTTGTACTCGGCGCCAAAGTGC 130230 Query 25801 CTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857 | |||||| || ||||| || || || ||||| || || || | ||| || ||||| Sbjct 130231 CGCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTCCTCTCGGTG-TCCSAGCCC 130286 >seq157 Length=115544 Score = 82.4 bits (90), Expect = 5e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 40723 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAAGGGTCGCACCCAA 40782 ||||||| | ||||||||| |||| ||| ||| | | |||| |||| ||| || | Sbjct 5193 TCTCGAGGATGAGCTGGGCGATCCGGTCCCCCTTTTGGACCTGAAAGTCCTCGGTGCCGA 5252 Query 40783 AGTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 40842 ||| || | | |||||||| | |||| |||||| | ||| ||||||||||| ||| Sbjct 5253 GGTTGAAGAGGACGACGCCGACGGGCCCCCGGTAGTCCGCGTCGACCACCCCGGCCCCGC 5312 Query 40843 CGTCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 40902 ||| || || | | ||| || || |||| ||| || | || | ||||| | |||| Sbjct 5313 AGTCGATCCCCTTCTTGACGGCGAGTCCCGACCGGGGGGCGATCCGGGCGTAG-GTCCCG 5371 Query 40903 GG 40904 || Sbjct 5372 GG 5373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340133044175727