Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq141 159 3e-34 seq386 127 2e-24 seq3 113 4e-20 seq22 89.7 5e-13 >seq141 Length=126064 Score = 159 bits (176), Expect = 3e-34 Identities = 178/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 || ||||||||||||||||||| ||||| |||| || ||||||||||| | ||| ||| Sbjct 117160 TAGACTCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAA 117101 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || ||| || ||| || |||||||| || |||||| ||||||| | | |||||||| Sbjct 117100 TCACTC--AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGAT 117043 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || ||||| ||||| | || || | ||||||| | ||| ||||| | Sbjct 117042 CCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATG 116983 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| || | |||||||| ||||| || || || || || ||||| |||||| Sbjct 116982 GCTCGACATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 116927 >seq386 Length=39556 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | || ||||||||||| | ||| | Sbjct 11896 TTTGCATTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGT 11837 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || |||| ||| | || ||||| || ||||| |||| || ||||| ||||||| Sbjct 11836 AGTCACTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGAT 11777 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || ||||| ||||| | || || | ||| ||| | | || |||| Sbjct 11776 CAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACG 11717 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| | |||||||| || ||||| || || ||||||||||| ||||| Sbjct 11716 GTTCAACGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | || | ||| ||||| | ||||||||||||||| | || | Sbjct 11440 TTTGCATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGT 11381 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | || | ||| |||| || ||||| |||| || ||||| ||||||| Sbjct 11380 AGTCGCTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGAT 11321 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||| ||||| | || || | |||||| | | | ||||| | Sbjct 11320 CCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAG 11261 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 | ||||| || | |||||| || || || || | |||||| || || ||||| Sbjct 11260 GCTCGACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||| || || |||| ||| | || ||| Sbjct 12098 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCC 12039 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| ||||||| | | |||||||| |||||||| ||||| ||||| | Sbjct 12038 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGG 11979 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | | | || |||| | || || || | || || || || Sbjct 11978 ATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTA 11919 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| ||||| Sbjct 11918 CCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 >seq3 Length=497493 Score = 113 bits (124), Expect = 4e-20 Identities = 150/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 |||| ||||||||| | || | |||||||| | || ||||||||||| | ||| || Sbjct 135397 TTAC-CTCCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTA 135339 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 |||||||| ||| ||| |||| || |||||| ||||||| | | ||| ||||| Sbjct 135338 ATCGCTCAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATC 135279 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||||| || ||||| ||||| | || || | ||||||| | | | |||||| | | Sbjct 135278 AGGAGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGG 135219 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCC 94980 ||||| |||| |||||||| || || Sbjct 135218 CTCGACATCAAGAGTGATGGTCTTACC 135192 >seq22 Length=300247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || ||||| ||||||| |||||||||||||| |||||||| ||||| ||||| | ||| Sbjct 203444 TGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATC 203385 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | |||||| | | | ||||| | | ||||| || | ||||| || ||||| Sbjct 203384 TTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCCG 203325 Query 94982 GTAAGAGTTTTCACAAAGATCT 95003 || | ||||| || || |||| Sbjct 203324 GTCAATGTTTTTACGAAAATCT 203303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285041599640