Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41 185 1e-42 seq151 178 2e-40 seq11 114 2e-21 >seq41 Length=226872 Score = 185 bits (204), Expect = 1e-42 Identities = 199/261 (76%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| || || |||||||| || || Sbjct 150612 GCCAAGCGTCACAGAAAGGTC-CTCCGTGATAACATCCAGGGTATTACCAAGCCCGCCAT 150554 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||| ||||| ||||||||| ||||||||||| |||| ||||| | Sbjct 150553 CCGTCGTCTTGCGCGTCGAGGTGGTGTCAAGCGTATCTCTGGATTGATCTACGAAGAAAC 150494 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| ||| |||| |||| | || ||| ||||| Sbjct 150493 CCGTGGAGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATTCCGTCACCTACACCGA 150434 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| ||||| ||||||| | ||||| || | || |||||||| Sbjct 150433 GCACGCCCGCCGTAAGACCGTCACTGCCATGGACGTTGTCTACGCCCTCAAGCGTCAAGG 150374 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| |||| || || || Sbjct 150373 ACGTACCCTTTACGGATTCGG 150353 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| || || |||||||| || || Sbjct 47572 GCCAAGCGTCACAGAAAGGTC-CTCCGTGATAACATCCAGGGTATTACCAAGCCCGCCAT 47630 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||| ||||| ||||||||| |||| |||||| |||| ||||| | Sbjct 47631 CCGTCGTCTTGCGCGTCGAGGTGGTGTCAAGCGTATCTCCGGATTGATCTACGAAGAAAC 47690 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| ||| |||| |||| | || ||| ||||| Sbjct 47691 CCGTGGAGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATTCCGTCACCTACACCGA 47750 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| ||||| ||||||| | ||||| || | || |||||||| Sbjct 47751 GCACGCCCGCCGTAAGACCGTCACTGCCATGGACGTTGTCTACGCCCTCAAGCGTCAAGG 47810 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 47811 ACGTACCCTCTACGGATTCGGTGGTTAA 47838 >seq151 Length=109738 Score = 178 bits (196), Expect = 2e-40 Identities = 187/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || ||||| || |||||||| || ||||||||||| || | Sbjct 72265 CGCCAAGCGTCACCGAAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 72207 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || ||||| ||||| ||||||||| |||| |||||| |||| ||||||| Sbjct 72206 TCCGCCGTCTCGCGCGTCGAGGTGGTGTCAAGCGTATCTCGGGATTGATCTACGAAGAGA 72147 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | ||| | || ||| | | ||| || | |||| || || |||||||| Sbjct 72146 CTCGGGGTGTCCTCAAGGTSTTTCTCGAAAACGTCATTCGTGATTCTGTCACCTATACCG 72087 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| |||||| | ||||| | || ||||| | ||||| || | Sbjct 72086 AGCACGCTCGTCGCAAGACCGTCACCGCTATGGACGTTGTGTATGCTCTCAAACGCCAGG 72027 Query 16671 GCCG 16674 | || Sbjct 72026 GRCG 72023 >seq11 Length=336136 Score = 114 bits (126), Expect = 2e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||| |||| ||||||||||| ||||| || || || || || || | | Sbjct 276400 CTTCGCGACAACATCAAAGGCATCACCAAGCCCGCTATTCGCCGCCTAGCACGCCGCGCT 276341 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | ||| || | ||||| |||| || | ||| | ||||| || Sbjct 276340 GGTGTCAAGCGCATGAGTGGGCTGATTTATGAGGAGACCCGCAAAGTTCTAAAGATATTT 276281 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| | | | |||||| ||||| || ||||||||||||||| || ||||| | Sbjct 276280 CTCCACAACCTTATCCGCGATGCGGTCATCTATACCGAGCACGCCCGCCGCAAGACACTG 276221 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 ||| ||| ||| | || ||||| | || || || || || | ||||||| || Sbjct 276220 ACCGCCAAGGACGTGGTGTATGCCCTCAAGCGCCAGGGACGCACTCTTTATGGATT 276165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074195176607