Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq217 672 0.0 >seq217 Length=78499 Score = 672 bits (744), Expect = 0.0 Identities = 735/971 (76%), Gaps = 8/971 (1%) Strand=Plus/Plus Query 135361 CACTTGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTG 135420 ||| |||||| | |||| | | ||| | || ||||||||||||||||| || | ||||| Sbjct 40568 CACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTG 40627 Query 135421 GTTTGGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATC-TGCTTTATTGTTGCTT 135479 ||| || || | ||| | || |||||||| || || || ||| ||||| ||| ||| | Sbjct 40628 GTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCAT 40686 Query 135480 TCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAA 135539 | || || |||||||| || || |||||||| ||||||||||||||||| || ||||| Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 135540 TGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTC 135599 | ||||| |||||||||||| | || |||| ||||||||| |||||| ||||| | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 135600 ACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTT 135659 ||||||| ||| | ||||||||||| || | || || ||| | || || || || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 135660 ATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGG 135719 | ||| | || || | ||||||||| |||| || || |||||||| || ||||||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 135720 AACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTG 135779 |||| || || || || || ||||| |||||||||| ||| || | ||| || ||||||| Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 135780 CCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTA 135839 | || || || ||||| ||||| ||||||| |||| ||||| |||| ||||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 135840 TGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACA 135899 |||| ||||| || ||||| || |||| |||| | || |||||||| || ||||||| Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 135900 TTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCT 135959 | || ||||| || | || ||| |||||||| || |||||||| || ||| |||||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 135960 CTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAAT 136019 | || ||||| || |||||||| || || | | | ||||| || || || |||| Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 136020 CCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTC 136079 || || | || |||||||| || || ||||| || || ||||||||||| || |||| Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 136080 ATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTAC 136139 | || ||||| || ||||| ||||||||||| ||||||||||||||||| ||| | || | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 136140 ACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTA 136199 |||| ||| | ||| |||||||| | |||||||||| | ||| |||| || || | Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 136200 CGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGT-ATC--TTCTGAAG 136256 | ||||| ||||||||||| |||||||||||||||||| | ||| ||| || || | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGC---TGTCATCGACTCCGAGG 41463 Query 136257 GTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGA 136316 | ||||| ||||||||||||| || | | || ||||| | ||| || |||||||| | Sbjct 41464 GACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCA 41523 Query 136317 TGCACGAGCGT 136327 ||||||| ||| Sbjct 41524 TGCACGAACGT 41534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627959373289600