Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq217 414 3e-111 >seq217 Length=78499 Score = 414 bits (458), Expect = 3e-111 Identities = 684/980 (70%), Gaps = 6/980 (1%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGG-AGTACTTATGATTCC 19357 ||| ||||||| ||||| ||||||||||| | |||||||| || | || | ||| |||| Sbjct 40590 TGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTA-TCATG-TTCC 40647 Query 19358 TTGCT-TACTAGCTGCTACTACTTGCTTTAT-ACTCGCCTTTATCGCAGCACCGCCTGTA 19415 || | || || || | | ||||| || ||| || ||||| || ||||| ||||| Sbjct 40648 CAACTCTTCTTGCCGCAGCATCATGCTTCATTACT-GCATTTATTGCCGCACCTCCTGTG 40706 Query 19416 GATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATT 19475 || || || || || || || || ||| |||| || | | ||||| || || || || Sbjct 40707 GACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATC 40766 Query 19476 TCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAA 19535 | || | || | || | ||| ||||| || ||||||| || || | |||||| Sbjct 40767 ACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAA 40826 Query 19536 GCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCAC 19595 || | | | | || || ||||| |||||||| || || || ||| | ||||| | ||| Sbjct 40827 GCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCAC 40886 Query 19596 TTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGA 19655 ||| | | ||||| || | ||| || | |||||||||| || || | | ||| Sbjct 40887 TTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGA 40946 Query 19656 ATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTT 19715 ||| | || ||||| || || |||| | ||||| | |||| || ||||| || Sbjct 40947 ATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTC 41006 Query 19716 CTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGT 19775 ||| ||||| |||||||||| ||||| ||||| ||||||||||||||| || Sbjct 41007 CTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGA 41066 Query 19776 ACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 19835 || || ||||| ||||| || ||||| || || ||||| ||||||||||| ||| | || Sbjct 41067 ACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCAT 41126 Query 19836 ATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTG 19895 ||| ||| ||||| || || ||||| |||||| | ||||| || |||||||| | | Sbjct 41127 ATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTT 41186 Query 19896 GTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAG 19955 ||||||||||| | ||| ||||| || || | | ||| || | || || ||| Sbjct 41187 GTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAG 41246 Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 || || || || || || || || || |||||||| || |||||||||||||| | | Sbjct 41247 TTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTC 41306 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || ||||| || || ||||| || || ||| || | || ||||| | ||| | Sbjct 41307 ATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGG 41366 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || | || || ||| ||| ||||||| ||| ||| ||||| |||||||| || Sbjct 41367 CCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAAC 41426 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCT 20195 || || ||||| |||||| | || | || | | ||| | ||| || ||||| Sbjct 41427 GGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCC 41486 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 || || | || | || | || ||| | || || |||||||| || |||||||||||| Sbjct 41487 GACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAAC 41546 Query 20256 TTCCCACTTGATTTAGCTTC 20275 || || |||||||| ||||| Sbjct 41547 TTTCCTCTTGATTTGGCTTC 41566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144439714946844