Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq217 517 2e-141 seq392 105 1e-17 >seq217 Length=78499 Score = 517 bits (572), Expect = 2e-141 Identities = 709/989 (72%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||| | ||||| | ||| || ||||| | | || | |||||||| ||| | | Sbjct 40581 TTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATC 40640 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||| ||||| |||||| || ||| || ||||||| || ||||| || || |||||| Sbjct 40641 ATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCT 40700 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || || || ||||||||||| ||||| || || || || | | || ||||| ||| Sbjct 40701 CCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAAC 40760 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 |||||| | || | || | || |||| ||||||||||| | |||||||| || | Sbjct 40761 ATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTT 40820 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 |||||||| || | | || || ||| | ||||| || || || ||||| ||||| | Sbjct 40821 TGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTG 40880 Query 211870 TTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGT 211929 | ||||||||| ||||| | | | |||||||| | ||||||||||||| || || Sbjct 40881 ATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGC 40940 Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989 | || |||||||||||||| | |||||| | || |||||||| |||| || |||| Sbjct 40941 CTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCT 41000 Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049 || ||||| ||||| | || || || |||||||| || |||||| | ||||| Sbjct 41001 GTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATC 41060 Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109 ||||| |||||||||||||| || ||||| || || || ||||||||||||||||| Sbjct 41061 AGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCG 41120 Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169 | |||||||| || ||||||||| | ||||| ||| | || ||||| || |||||||| Sbjct 41121 CTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGG 41180 Query 212170 TCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGT 212229 ||||||||||| || || | |||||||||||||| | || || || | || Sbjct 41181 TCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGA 41240 Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289 |||||||| || || ||||| || || || ||||| || || || || || ||||| || Sbjct 41241 TACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGA 41300 Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349 | || |||||||| || || || ||||||||| | | | ||||||||| | || Sbjct 41301 CGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCT 41360 Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 212409 |||||||| | || | |||| ||| | |||||| ||| ||| ||||| |||||| Sbjct 41361 CTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAAC 41420 Query 212410 CTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCCTAC 212468 || || ||||||||||||||||| | || | || | ||| | | || | || Sbjct 41421 CTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTC-CGAGGGACGTGTCATCAACAC 41479 Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528 |||| || | | ||| | || | ||||| ||||| || ||||||||| | ||||| Sbjct 41480 CTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGC 41539 Query 212529 ACACAACTTCCCACTTGACTTAGCATCTG 212557 || ||||| || ||||| || || |||| Sbjct 41540 TCATAACTTTCCTCTTGATTTGGCTTCTG 41568 >seq392 Length=40939 Score = 105 bits (116), Expect = 1e-17 Identities = 173/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||||||||||||||| |||||||| || | | || |||||||| || |||||||| Sbjct 32225 TGGTATTCTCTTCAACCACGAATCGCCTCGTCGTGGACGAACATTTGTGACCCGTAAGAT 32284 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTC--TTTATCTTGGTAAT 194063 ||| ||| | | |||| | | | | | | || ||| | || |||||||| Sbjct 32285 TACTGCCGGTATCGC-AAGAATTGTTTGCGGTCTC-GACAATTGCATCTACCTTGGTAAC 32342 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123 | || | ||| | ||||||||||| || ||||| || |||| |||||| |||| Sbjct 32343 ATCGATTCGAAGCGCGATTGGGGACATGCGCGTGATTACGTGGAAGGAATGTGGAGAATG 32402 Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGA 194183 ||||| || || ||||||||||| || || | ||||| |||||| ||||||| || Sbjct 32403 TTGCAGCAAGACGAACCCGATGACTACGTTTTGGCTACGGGTGAAACACATTCTGTCCGA 32462 Query 194184 GACTTT 194189 || ||| Sbjct 32463 GAGTTT 32468 Score = 100 bits (110), Expect = 5e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||| | ||||| || |||||||| ||| |||||||| || |||||||| || |||| Sbjct 31819 AACCAACCGAGATTTACAATCTTGGAGCTATGAGTCATGTGAAGGTTTCCTTCGATATGC 31878 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 | ||||| || || |||| || | | || ||| |||| | || ||| | || Sbjct 31879 CCGAGTACACAGCTGATGTCGACGGGATTGGTGTCCTTCGAATGTTGGATGCAATCCGAG 31938 Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818 ||| |||||||| || || || | || || ||||||||||| || || ||||| Sbjct 31939 CAGCGGGCATGGAGAATGACGTGCGATTTTACCAAGCATCTACCAGTGAGCTTTATGGAA 31998 Query 193819 GTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTA 193873 ||| | | || || | ||| |||||||| || ||| |||| || || || || Sbjct 31999 AAGTTGTCGAGACCCCCCAATCCGAAACCACTCCCTTTTATCCCCGTTCGCCATA 32053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807544106210440