Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudo-
nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq217 517 2e-141
seq392 105 1e-17
>seq217
Length=78499
Score = 517 bits (572), Expect = 2e-141
Identities = 709/989 (72%), Gaps = 2/989 (0%)
Strand=Plus/Plus
Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629
|||| | ||||| | ||| || ||||| | | || | |||||||| ||| | |
Sbjct 40581 TTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATC 40640
Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689
||| ||||| |||||| || ||| || ||||||| || ||||| || || ||||||
Sbjct 40641 ATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCT 40700
Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749
|| || || || ||||||||||| ||||| || || || || | | || ||||| |||
Sbjct 40701 CCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAAC 40760
Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809
|||||| | || | || | || |||| ||||||||||| | |||||||| || |
Sbjct 40761 ATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTT 40820
Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869
|||||||| || | | || || ||| | ||||| || || || ||||| ||||| |
Sbjct 40821 TGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTG 40880
Query 211870 TTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGT 211929
| ||||||||| ||||| | | | |||||||| | ||||||||||||| || ||
Sbjct 40881 ATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGC 40940
Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989
| || |||||||||||||| | |||||| | || |||||||| |||| || ||||
Sbjct 40941 CTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCT 41000
Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049
|| ||||| ||||| | || || || |||||||| || |||||| | |||||
Sbjct 41001 GTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATC 41060
Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109
||||| |||||||||||||| || ||||| || || || |||||||||||||||||
Sbjct 41061 AGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCG 41120
Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169
| |||||||| || ||||||||| | ||||| ||| | || ||||| || ||||||||
Sbjct 41121 CTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGG 41180
Query 212170 TCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGT 212229
||||||||||| || || | |||||||||||||| | || || || | ||
Sbjct 41181 TCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGA 41240
Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289
|||||||| || || ||||| || || || ||||| || || || || || ||||| ||
Sbjct 41241 TACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGA 41300
Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349
| || |||||||| || || || ||||||||| | | | ||||||||| | ||
Sbjct 41301 CGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCT 41360
Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 212409
|||||||| | || | |||| ||| | |||||| ||| ||| ||||| ||||||
Sbjct 41361 CTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAAC 41420
Query 212410 CTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCCTAC 212468
|| || ||||||||||||||||| | || | || | ||| | | || | ||
Sbjct 41421 CTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTC-CGAGGGACGTGTCATCAACAC 41479
Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528
|||| || | | ||| | || | ||||| ||||| || ||||||||| | |||||
Sbjct 41480 CTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGC 41539
Query 212529 ACACAACTTCCCACTTGACTTAGCATCTG 212557
|| ||||| || ||||| || || ||||
Sbjct 41540 TCATAACTTTCCTCTTGATTTGGCTTCTG 41568
>seq392
Length=40939
Score = 105 bits (116), Expect = 1e-17
Identities = 173/246 (70%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005
||||||||||||||| |||||||| || | | || |||||||| || ||||||||
Sbjct 32225 TGGTATTCTCTTCAACCACGAATCGCCTCGTCGTGGACGAACATTTGTGACCCGTAAGAT 32284
Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTC--TTTATCTTGGTAAT 194063
||| ||| | | |||| | | | | | | || ||| | || ||||||||
Sbjct 32285 TACTGCCGGTATCGC-AAGAATTGTTTGCGGTCTC-GACAATTGCATCTACCTTGGTAAC 32342
Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123
| || | ||| | ||||||||||| || ||||| || |||| |||||| ||||
Sbjct 32343 ATCGATTCGAAGCGCGATTGGGGACATGCGCGTGATTACGTGGAAGGAATGTGGAGAATG 32402
Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGA 194183
||||| || || ||||||||||| || || | ||||| |||||| ||||||| ||
Sbjct 32403 TTGCAGCAAGACGAACCCGATGACTACGTTTTGGCTACGGGTGAAACACATTCTGTCCGA 32462
Query 194184 GACTTT 194189
|| |||
Sbjct 32463 GAGTTT 32468
Score = 100 bits (110), Expect = 5e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698
|||| | ||||| || |||||||| ||| |||||||| || |||||||| || ||||
Sbjct 31819 AACCAACCGAGATTTACAATCTTGGAGCTATGAGTCATGTGAAGGTTTCCTTCGATATGC 31878
Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758
| ||||| || || |||| || | | || ||| |||| | || ||| | ||
Sbjct 31879 CCGAGTACACAGCTGATGTCGACGGGATTGGTGTCCTTCGAATGTTGGATGCAATCCGAG 31938
Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818
||| |||||||| || || || | || || ||||||||||| || || |||||
Sbjct 31939 CAGCGGGCATGGAGAATGACGTGCGATTTTACCAAGCATCTACCAGTGAGCTTTATGGAA 31998
Query 193819 GTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTA 193873
||| | | || || | ||| |||||||| || ||| |||| || || || ||
Sbjct 31999 AAGTTGTCGAGACCCCCCAATCCGAAACCACTCCCTTTTATCCCCGTTCGCCATA 32053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807544106210440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |