Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq217 527 7e-145 >seq217 Length=78499 Score = 527 bits (584), Expect = 7e-145 Identities = 712/984 (72%), Gaps = 10/984 (1%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| | ||| ||| ||||| ||| | ||| | |||||||| ||| | ||| ||||| Sbjct 40590 TGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCA 40649 Query 170735 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 170794 |||||| | || || | || |||||| ||||| || || || ||||| || || Sbjct 40650 ACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGAC 40709 Query 170795 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTC 170853 || ||||||||| | ||||| ||||| || ||| ||||| || ||||| ||||||||| | Sbjct 40710 ATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTT-TACGGTAATAACATCATCAC 40768 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 || |||| | || |||| |||||||| || | |||||||| ||| | |||||||| Sbjct 40769 CGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGC 40828 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 ||| | |||||||| ||||||||||||||||| || ||||| || ||| | | ||||| Sbjct 40829 TGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTT 40888 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 |||| | ||| | || | |||||||| | |||||||||| || || | || ||||| Sbjct 40889 CCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAAT 40948 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| | ||| |||| ||| |||||||| | || || || || ||||| Sbjct 40949 GCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCT 41008 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 || || | || || || ||||| ||||| ||||| || |||||| || || Sbjct 41009 CACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAAC 41068 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||||||||| || ||||| || || |||||||| || |||||||| | ||||| Sbjct 41069 CTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATAT 41128 Query 171214 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGT 171273 ||| || || |||||| | ||||| || | | ||| || |||||||| ||||| || Sbjct 41129 GGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGT 41188 Query 171274 GACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA-AAACTACGGCTATAAGT 171332 || || ||| | ||| | || || || || ||||| | || || |||| || |||| Sbjct 41189 TACTTCCTCTTTGATCCGTGAAACCACCGAAAACGA-ATCCACCAATAACGGATACAAGT 41247 Query 171333 TCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 171392 | || || ||||| ||||| || |||||||| || ||||| || ||||| || | | | Sbjct 41248 TTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCA 41307 Query 171393 TCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCC 171452 ||||||| || || || ||||||||||| ||| | | ||||||||| | ||| | | | Sbjct 41308 TCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGC 41367 Query 171453 CTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACG 171512 ||||| | || | |||| ||| | |||||| ||| || ||||| |||||||| |||| Sbjct 41368 CTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACG 41427 Query 171513 GATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCAACA--TGGG 171569 |||||||||||||||| | || | || | | ||| ||| | ||||| |||| Sbjct 41428 GATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGA---CGTGTCATCAACACCTGGG 41484 Query 171570 GAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACA 171629 || | | ||| | || | ||||||||||| || ||||| ||| | ||||| || | Sbjct 41485 CCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATA 41544 Query 171630 ACTTCCCACTAGACCTAGCATCTG 171653 |||| || || || | || |||| Sbjct 41545 ACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570260965932360