Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq134 100 3e-16 >seq134 Length=128537 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || |||||| |||||| | ||||| || | ||| |||| || || ||||| |||||| Sbjct 121564 CAAGCAAAAGAACAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAA 121623 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 |||||||| | ||||||||||| | ||| | || || ||||| || ||||| || Sbjct 121624 CCGGGCATAAGGCCTCTCTTTTTCAGCCAGTAAATGGAACAGAATGCACCAGAAAAAAAG 121683 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 || ||||| || ||||| || || || | |||||| || | | || || |||| || Sbjct 121684 ATTCCCTCGACAGCAGCGAAGGCCACGAGCCGTTCAGCGAAGGAAGCGTC-GGATCCGAT 121742 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAA 21689 | | || |||||||||||||| | || || Sbjct 121743 GT--ACCGTTGGGCCCATTTTGCCTTCTTTTCAA 121774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531893493012760