Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 seq108 190 3e-43 >seq3 Length=497493 Score = 206 bits (228), Expect = 3e-48 Identities = 504/754 (67%), Gaps = 8/754 (1%) Strand=Plus/Minus Query 62900 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 62959 ||| ||||| || || || ||||| | | |||| |||||| || || || ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 62960 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63019 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 63020 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63079 ||| || ||| | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 63080 TCGAGCCTTTAT-TATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTT 63138 ||| || || | || ||| | | |||| |||||||| | ||| | | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGAC 63197 | || || | ||| | || | | | ||||| |||| ||| |||||||||| | Sbjct 139599 CAAAYTCTTTTCCGCTG-CACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || | | | || | || |||||||||||||| | |||||| ||||| || | |||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCA 63315 ||||||| | || ||||| || ||||| || |||||||| |||| | ||||| | | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGA 139423 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 ||| || |||||||| ||||| | ||| | || | | |||||||| || |||| Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 | ||||| | |||||| || || || ||||| | | ||| |||| | || || | Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | |||| ||||| ||| || || || |||||||| | | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATC 139243 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | ||||| || || ||| || || | |||||||| ||||| || ||||| || ||| Sbjct 139242 CAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCG 139183 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 || ||| || |||| | || | ||||| || || | || || || | |||| Sbjct 139182 AAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTC 139123 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 | | || ||||| |||||||| || || ||||| Sbjct 139122 CAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 190 bits (210), Expect = 3e-43 Identities = 554/847 (65%), Gaps = 10/847 (1%) Strand=Plus/Minus Query 62973 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63032 || ||||| || ||||||||||| ||| ||||| || |||||| || | ||| | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 63033 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT 63091 || || || ||||| | ||| || || | || || ||||| | || | |||| || Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCT-GCGCCTGAAT 13091 Query 63092 TATAGATTTGTATCTCCT---TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63148 | | || | | | | |||| | ||||| | |||||| | |||||| | Sbjct 13090 TGT---TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTG 13034 Query 63149 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63208 ||| || | | || || || || || ||||||||||||| ||| |||| Sbjct 13033 TCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTT 12974 Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 |||| || |||| ||| || || ||||| ||||| |||| ||| | ||| | | Sbjct 12973 GGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGC 12914 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 | || | ||||| || || || |||||| | || || | ||||| | || Sbjct 12913 GCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTG 12854 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||| || |||||||| ||||| || ||| || ||| ||| |||||||| | ||| Sbjct 12853 CCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTA 12794 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 || |||||||| || | || | |||||| || | || || || ||| |||| ||||| Sbjct 12793 TCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGT 12734 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 || || ||| | |||||||||||| || ||| ||||| ||||| ||||| Sbjct 12733 TCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGC 12674 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 || || || | ||||| | || | ||||| ||||| || || ||| || || Sbjct 12673 GTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTC 12614 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 |||| | | |||||||| ||||| || | | ||||| || || || | Sbjct 12613 CTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAG 12554 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTG 63687 ||| || | || || || || || ||| || || || || |||| ||| | | | Sbjct 12553 GGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG 12494 Query 63688 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 || ||||| | |||||||| || ||||| ||||| |||||| ||| |||| || Sbjct 12493 -CTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTT 12435 Query 63748 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63807 | |||||||| || | || | ||||||||| || || | |||||||||||||| | Sbjct 12434 CTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGT 12375 Query 63808 AGTTGTA 63814 | | ||| Sbjct 12374 AATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622938642262840