Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq108 98.7 1e-15 seq456 87.8 2e-12 >seq108 Length=147947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 211/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 148071 TATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttttttGATTA 148130 || ||||| || |||| ||| || || ||||| |||| ||||| |||||| Sbjct 13245 TACTGAACAATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTGATTC 13186 Query 148131 TTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGACTTG--AG 148188 || ||||| |||||| || ||| |||||| || | ||| || ||||| || || Sbjct 13185 GACTTGTTGTTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTGCGAG 13126 Query 148189 TCTCAATAATTTTTCTATGAAGATCTAAAGC--CGAAATTTGTTTTTTAAACTTGCCTTC 148246 || ||| | || | | ||| || || | |||| || | ||||||||| Sbjct 13125 TC-CAAGA---TTGCGAACCAGAGCTGCTGCGCCTGAATTGTTTGGCGACCCTTGCCTTC 13070 Query 148247 GGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGG 148306 |||||| |||||||| | |||| ||| || || || | ||||||| | |||||| Sbjct 13069 TTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGG 13010 Query 148307 ACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATAAACAG 148366 ||||||||||| |||||||| | |||| |||| | ||| || | | ||| ||||| Sbjct 13009 GCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAG 12950 Query 148367 ATCAGGTGTCCA 148378 ||||| |||| Sbjct 12949 GTCAGGGATCCA 12938 >seq456 Length=31050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 |||||||| || | ||||| || | |||||| | || | ||| | |||||||||| Sbjct 6642 TTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGACACCATC 6701 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || | |||||| ||||| ||||| ||||| || |||||||| || || | ||| Sbjct 6702 GACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAGCGTCTC 6761 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | ||| || ||| | || |||| | | | | |||||||| ||||| || || Sbjct 6762 ATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAG 6821 Query 26958 GAATCTAC 26965 ||||| || Sbjct 6822 GAATCCAC 6829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478655824375280